Acidithiobacillus caldus SM-1: Atc_m129
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Entry
Atc_m129 CDS
T01581
Name
(GenBank) DNA ligase, NAD-dependent, putative
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acu
Acidithiobacillus caldus SM-1
Pathway
acu03030
DNA replication
acu03410
Base excision repair
acu03420
Nucleotide excision repair
acu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Atc_m129
03410 Base excision repair
Atc_m129
03420 Nucleotide excision repair
Atc_m129
03430 Mismatch repair
Atc_m129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acu03032
]
Atc_m129
03400 DNA repair and recombination proteins [BR:
acu03400
]
Atc_m129
Enzymes [BR:
acu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Atc_m129
DNA replication proteins [BR:
acu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Atc_m129
DNA repair and recombination proteins [BR:
acu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Atc_m129
NER (nucleotide excision repair)
GGR (global genome repair) factors
Atc_m129
MMR (mismatch excision repair)
DNA ligase
Atc_m129
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Atc_m129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEK59660
UniProt:
F9ZU40
LinkDB
All DBs
Position
megaplasmid:complement(128383..130251)
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AA seq
622 aa
AA seq
DB search
MLHISKESVRSLVPAFLDDETLVAVLEALNRAYRAGDPWVSDAEYDHVWRAELEDRNPEH
PFLHRVEPEPQELFSGPLVHHSQRMLSTDKAYDSDKLSRFFARCEKASVQLGWAEKPMYQ
VQAKLDGLSGRLYPGRVLATRGDDGRHGRNISHALERGLTIIGGVEEGAGEIVVVEDYFQ
SVLAPKGYEHPRNFMVGFCGADNPSADHREAAAAGVAHFVAYRTLPAPTFTAEWLLAEID
TIFAEITGACPYRTDGIVISAMGTRLRDYMGATDHHHRWQIAFKKNIEGVRAVATSVVLQ
TGRTGVVTPVVHIEPVQLPGATVRKASGHNAAKLEEDGIGPGAVLRIVRSGEVIPTIVGV
EEPSAHPVAFTHCPSCGTELVTDGRFRRCPATNTCPAQASGGIHYFFQTLYTAKGFGKKI
CAALAAAEKSIPAILQMQAEDFVAIGISPGVAANLADAIATAKQTPVPAARFVAALGIPH
VGEASAAKLLSVFGSIPALIDEAEPNRIASIPEFGEITGSAIAEYIEEHRAELQEMLAAG
IPLATTTQSTGPLAGEVLVFTGTFSRPRPELEALAREAGATVLSSVSRKTTRLFVGEKPG
ETKVRKAEQLGIPQATEADFPL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacatcagcaaagaaagcgttcgctccctggttccagcgtttctcgacgacgaa
acgctggtagccgtgctcgaggcgctgaaccgtgcctatcgcgccggcgatccctgggtg
tcggacgcggaatacgaccatgtctggagagcggagctcgaagaccgcaatccagagcat
cctttcctgcaccgggtggaaccggaaccgcaggagttgttttctggtcccctggtacac
cacagccagcggatgctgtcgaccgacaaggcctacgacagcgacaagctctcccgcttt
tttgcgcgctgcgaaaaggcctccgtccagctcggctgggccgaaaagccgatgtaccag
gtacaggccaagctcgacggcttgagcggccgcctatatcccgggcgcgtgctggctacc
cgcggcgatgacggtcgccacggccgtaacatcagccatgccctcgagcgcggccttacc
atcatcggtggggtcgaggaaggggcaggggagattgttgtggtggaggattattttcag
tccgtcctcgccccaaagggctacgagcacccacgcaatttcatggtgggtttctgcgga
gccgacaatcccagcgccgatcaccgggaagcggcagccgctggcgtagcgcattttgtc
gcatacaggaccttgcctgcgccaactttcaccgcggaatggctgctggcggagattgat
acgatctttgcggaaatcacgggcgcctgcccgtatcgtacggacggcatcgttatttcg
gcgatgggcacccggctacgggactacatgggagcgacggatcaccaccatcggtggcag
atcgccttcaagaaaaatatcgaaggcgtccgggcggtggccacatccgtggtcctgcag
accggacgcaccggggtcgtcacacccgtagtccacatcgagccggtccaactcccgggt
gccaccgtgcgcaaggcctccggccacaacgcggccaaactcgaggaagatggcatcggc
cccggggccgtgctgcgcatcgtgcgttccggggaagtgatccccacgattgtgggagtc
gaagagccatcggcgcatccggtggcgttcacgcactgcccgtcctgtgggacggaactc
gtaacggacgggcgctttcgtcgttgtccggccacgaacacctgccccgcgcaggcgtcc
ggggggatccattatttcttccagacgctctacacggccaagggcttcggcaagaaaatc
tgcgcggcgctggccgctgcggaaaaaagtatccccgctatcttgcagatgcaggcggag
gactttgtcgccatcgggatttctcccggagtggcggccaatctggccgacgccattgcc
accgccaaacagacgccggtccctgcggcccgttttgtggcggccctggggatccctcac
gtgggagaggcatcagcggccaaactgctcagcgtttttgggagcatcccggcgctgatc
gacgaggccgaacccaaccgcatcgccagcatccccgaattcggggagatcactggctcc
gccattgcggagtacatcgaggaacaccgggcggagctgcaggagatgttggccgcaggt
atcccgctcgcaaccaccacccagtccaccgggcccctcgcgggcgaggtgctggtcttc
accgggaccttctcccgccccaggccagagctcgaagccctggcgcgggaagcgggggca
acggtcctcagtagcgtctcccggaaaaccacccgtctgtttgtaggggaaaagcccgga
gagaccaaggtacgcaaagccgagcaactcggcattccacaagcaaccgaagcggatttt
ccgctgtaa
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