Athene cunicularia (burrowing owl): 113476112
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Entry
113476112 CDS
T05777
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
acun
Athene cunicularia (burrowing owl)
Brite
KEGG Orthology (KO) [BR:
acun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
acun03036
]
113476112 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
acun03400
]
113476112 (SMCHD1)
Chromosome and associated proteins [BR:
acun03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
113476112 (SMCHD1)
DNA repair and recombination proteins [BR:
acun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
113476112 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
113476112
NCBI-ProteinID:
XP_026697241
LinkDB
All DBs
Position
2
AA seq
2045 aa
AA seq
DB search
MNLPSSLSQNDGHLEGSRRDLLPVDAVVLGLPRKLGCSSALEAVAVSLAEAHSWNGGEDK
EEAAPAQLAGSCLAFGIATDENFVITTTNRKEITEDNFRELVQDGVTLYLLQSVDQTLLS
ATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKL
LFDDSHGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLN
SDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRN
RKPSDSTHIASDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHI
YHYYVHGPKGNEANAVTKDISPFNNIDIQISMFEKGKVPKIVSLREIKDDMQTLYINTAA
DSFEFKAHVEGEGIVEGIIRYHPFLYDRETYPDDPCFPSSFNDDDDDDDCFIVEKGARGK
RPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTF
MDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGVTTRTDL
PSKRMQSPWTMYAAIEWDGKTYRTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGE
VQIALEPQALYAETKTVPISKLDRTVSDKAIKKYIEDEMARLPDKLSVTWPEGDELLPND
TRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQ
HGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKPEKFS
IGLLELPFRVGVPFNIPLELQDEFGHATQLRTDIKPVLEASGLTLQYEEVTAEAKCIIKG
VTAKGSINSCQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPHQLKVKPDSDILKIENGTAF
PFQVEVLDESGNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQ
ILKARIEILSCKDVPPVEKIIKLLPSSHVARLQVLSVDGQKAIQIKHQDEINWVAGDIMH
NLIFQMYDEGEREIHVTPAVAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDIRYCLIT
YLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQVGEELQSEIDVMITDQYGNQVQTVT
SACVNSLGVSGPGLDKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRV
NLTAGSPAKLQFVDWPELERPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKISLTKSNN
LKIVPSNQLHKTDENGRANLGIISIHAPRGEHALQLKASHGKTTLDCPIITFSVLPDPEK
PVCLNVKYDKTVSFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEAQSSGTRTPID
VTTFSCSKVKDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLSSDQIIAEVVPNDP
VRLLPDSLPATPAVSNVRTLTSRTLVKDLHLHVMDQYNNHTGIDLVGRIIAKIKSPNEDD
KEIPQFQGKVSTVEFPFDRGSAVINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYCL
SFMFYNDFKKQQQMATLTRERDQLSQSIGVYRNWFDTTNQLVTEMKCQVKEAETRETHLK
NELKKHQIELPQTNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDILGKIAHL
AQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNR
PLPHLRNGKIFFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKE
VVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTLSGQIDLL
QQYRAAVVKLDNVNKDLGVHLQSLNTPEMQKKKQELAEQEKNLKLIEQKLGMTPSDKVTE
SLLQPILLDMSDTPIPSKRMRRETVKKLYSSEEWISSPTKKQQQQQQLLQIPASELNGTP
RKRKA
NT seq
6138 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgcccagtagcttatctcaaaatgacggccatttggagggaagcagaagggac
ctgctgccagtagatgcagtagtgctgggcttacccaggaaactcgggtgtagctctgcc
ttagaggctgttgcagtcagcttagctgaggctcactcatggaatgggggagaggacaag
gaggaggctgcccctgctcagttagcaggcagctgtcttgcatttggcatagctactgat
gaaaactttgttatcaccacaacaaacaggaaggaaattacagaagacaacttcagagaa
cttgttcaggatggagttactttgtatctgctacagtcagttgatcagacgctgctttca
gcaaccaaggagcgaattgacttcctgccccactatgacacgcttgtcaaaagtggcatg
tatgaatactatgccagcgaaggccaaaatcctttgccgtttgcccttgctgagttgatt
gacaattctctgtcagctacgtcacgaaatactggtattcggagcatacagataaaattg
ttatttgatgactcccatggaaaaccagctgttgctgtgattgataatggaagaggaatg
acttctaaacaacttaacaactgggctgtatatagattgtcaaagtttacaaggcaaggt
gactttgagagtgatcattcaggatatgtacgccctttgccagtgcctcgtagtttaaat
agtgatatctcgtattttggagttggaggcaagcaagcagtgttcttcgttggacagtct
gccagaatgataagcaaacctgcagattctcaggatgttcatgaacttgtcctttctaaa
gaagattttgaaaagaaggagaaaaacaaagaagcaatatatagcggatacattcgaaac
agaaagccatctgactctactcacatcgcaagtgatgatgaaagatttcttcataatcta
atattagaagaaagggataaagagagttttacagcagttgtcattacaggtgtacaacca
gatcatatgcaatacttgaaaaattactttcatctttggacaaggcagctggcacatatc
tatcactattatgtccatggaccaaaaggaaatgaagctaatgctgtaacaaaagatata
agccctttcaacaacattgacattcagatttcaatgttcgaaaaaggaaaagtaccaaag
attgtcagtcttagggagatcaaagatgacatgcagacattgtatataaatactgcagca
gatagttttgagtttaaggcacatgttgaaggagaaggtatagtggaaggcatcatccga
tatcatcccttcctgtatgacagagaaacatatcctgatgatccatgttttccatcaagt
tttaacgatgatgatgatgacgacgactgctttatagtagaaaagggtgccaggggaaaa
aggcctatttttgaatgcttttggaatggaagattaataccgtacacaactgtggaagat
ttcgactggtgtgctcctccaaagaagagaggattagcacctattgaatgctacaacaga
atttctggtgcattatttaccaatgataagttccaggtcagcacaaacaaactcaccttc
atggatctggagctgaagctaaaagataagaatactctgttcacgagaatcttcaatgga
caggagcagcgaatgaaaattgacagagaatttgctttgtggctcaaagactgtcatgaa
aaatatgacaaacagataaaattcacagtttttaaaggagtaactacacgtactgattta
ccatccaaaagaatgcagagcccttggacaatgtatgctgcaatagagtgggatgggaag
acatacagaactggacagcttgtgaaaactgttaagactcttccaatattctatggaagt
attgagaaattttttttgtatggagaccatgatggagatatatttgccacaggaggagaa
gttcaaattgctttggaacctcaggcattgtatgctgaaacaaaaactgttccaatctca
aaacttgacagaacagtgtctgacaaagctattaaaaaatacatagaagatgaaatggca
agacttcctgacaaattatcggtaacatggcctgaaggagatgagttattaccaaatgat
acaagatttgctggtacaccaataggagcattaagaatagaaattttgaataaaaaagga
gaagcaatgcaaaaacttccaggtacaagtcacggaggttcaaagaaacttcttgttgaa
ctcaaggttattttacattcacctactgggaataaagaaataatttcccatatcagtcag
catggaggcaaatggccatactggtttaaaaaaatggaaaatcttcagaaacttgggaac
tacaccttgaaactgcaagtagtattgaatgaaagtaatgcagatacttatgctggaagg
cctctaccatctaaaatatttaaatttactattatagagggcaaaccagagaaattttca
attggtcttttggagcttccttttcgagttggagtaccttttaatattcctttggaattg
caggatgaatttggtcatgcaacacagttgagaactgacattaaaccagttcttgaagct
agtggattgacattgcagtatgaagaagtaactgcggaagcaaagtgcatcattaagggt
gtcactgctaaaggcagtataaatagctgccagggcaagaactttaatctgaaggttacc
cttcctggtttgaaagaagacacacaaatctttaaaataagattgcagcctggtcctcct
catcagttgaaagtaaaaccggattctgacatcctaaagattgaaaatggtacagctttc
ccctttcaggttgaagttctggatgaatcaggaaatataacagcacagccaaagttgata
gttcattgtaagtttttaggtgcttcaaaccttcctgtgtattctgtggactgcagtaat
gcaggaacaaacattttaactggtccagttatacatgttcagaatatcaagaaagaccag
atactgaaagcaaggattgaaatacttagttgtaaagatgtgccaccagtggaaaagatt
attaaacttcttcctagcagtcatgttgcaagactacaggttttaagtgtggatggacaa
aaagcgattcaaattaaacatcaggatgaaatcaattgggttgctggcgatatcatgcac
aaccttatatttcagatgtatgatgaaggagaaagggagatacatgtaactccagctgtg
gcagaaaaaatcaaggttaactggacacctagaattaacagagaacagttgattcaggga
ttattgcctgatgtaaaagtaccaacatcagtaaaagatatacgttactgtctaattact
tatcttgatgaccatgtgtctttggagagtgcattcacagtcagaccacttcctgatgaa
cccaaacacattaaatgtaaattaaaaggaccaaacacactgcaggtgggtgaagaacta
caaagtgaaattgatgtaatgattacagatcagtatggaaatcaggttcagacagtgaca
tctgcctgtgtaaattccctaggagtttctgggcctggacttgataaatcaaatttgaaa
ataacttggcaggaaagtactctaacaatgagagtaaaaggtattcggtttaagccttgt
ttacttggtagcaaagaactgtgctttgcttggcgtgaattttctgacttcctcagagta
aacttaactgcgggatctcctgctaaattgcagtttgtggactggccagagttagaaagg
cctgttgcagtgattaatggtagagaactgcagaagccccttattgttcagctgtgtgat
cagtggggaaatccatctcctgaacctaatgtcaaaatcagccttacaaagagtaacaac
ttaaagattgttccttcaaaccagctacataaaacagatgaaaatggtagggctaacctg
ggaattattagtattcatgcacctaggggagagcatgctttacagcttaaggcctcacac
ggaaagaccacattagattgtcctataatcacattcagtgtgctgcctgatcctgagaaa
cctgtctgcttgaatgttaaatatgacaaaacggtttcttttccagcaggaggtaccttc
cctgattttatggtcagtgttctttctgaagatgacaacattattaaaaatattaatcca
gcacggatttctatgaaaatgtgggaagcacagagcagcggaactaggacaccaattgat
gttacaacatttagctgtagtaaagtgaaggatgacaaggaagatggcttcttctatttc
agggataaagtggttccagagagagtgggcacttacagtatccagtttacctttgcaatg
gataagacaaatatgctcagcagtgaccagattatagctgaagttgtacctaatgaccct
gtacgcttgttacccgattctttaccagctactccagcagtttccaatgttcgaactctt
actagccgtacactggtcaaggatttacacctccatgtaatggatcaatacaacaaccac
actggaattgatctagttggcagaataatagcaaaaattaagagccccaatgaagatgat
aaagagatcccgcagtttcaggggaaagtcagtacagttgagtttccatttgacagagga
tcagctgtaattaatctagtgctggctgaaaacagtcctggaagagatagcactgaatat
attcttgtatttgagccagatctgccagctttgaaaaaacctttggaaccatattgtttg
tcatttatgttttacaatgatttcaagaagcagcaacagatggcaacacttacaagggag
agagaccaattatctcagtccataggtgtttacagaaattggtttgatactacaaatcag
cttgtaactgaaatgaaatgtcaggttaaagaagctgaaacaagagaaactcacctgaag
aatgaactgaaaaaacaccaaattgaattaccacagacaaacacacttcagtatgtggat
tctcttataaaacaaaagatgttggatcaagaaggagtaatgaaacagccaaggcgaact
tgtactctcccaaactatccaaaaggcaaccaggatattttaggcaagattgcacatttg
gctcaaattgaggacaatgaagcagcgaaagtcatctcttggcatttggcaagtgacatg
gactgtgtagtcacgttgactactgaagccgctcgttctatttttgatgaaactcaaggc
cgacaacaagtgttaccccttgattctatttacaagaagacactgcctgattggaacagg
ccattacctcatttaagaaatggaaaaatcttcttcagacctattggaaatcctgtgttt
gccagagatctgttaacatttccagataatgtagagcattgtcaaacagtgtttgggatg
ctcttgggtgacactatcattatagataacttggatgctgccaaccattacagaaaagag
gttgtaaaaattacacattgccctactttgctgactagggaaggagacaggattcgcagc
aatggaaaatttggaggcctccagaataaagctcctccaatggacaaactcagaggaatg
gtatttggagcacccatgccaaaactttactcgactttatctggacagatagatcttctt
cagcagtaccgtgcagcagtagtgaaacttgataatgtgaataaggaccttggtgtacat
ttgcagtcacttaacactccagaaatgcaaaagaaaaaacaagaacttgccgaacaagag
aaaaacctcaagctaatagaacaaaaattgggtatgactccatcagataaagtcactgaa
tcattacttcagcctatactgttagatatgtctgacacccccatcccttctaaaagaatg
cgaagagaaacagtaaaaaaattgtatagctcagaagaatggatctcctctcccacaaag
aagcaacagcagcaacagcaactgctgcaaatacccgcttcagaacttaatggaactcca
cgaaagagaaaggcttag
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integrated database retrieval system
