Alicyclobacillus cycloheptanicus: JI721_09080
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Entry
JI721_09080 CDS
T08830
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc03030
DNA replication
acyc03410
Base excision repair
acyc03420
Nucleotide excision repair
acyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI721_09080 (ligA)
03410 Base excision repair
JI721_09080 (ligA)
03420 Nucleotide excision repair
JI721_09080 (ligA)
03430 Mismatch repair
JI721_09080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acyc03032
]
JI721_09080 (ligA)
03400 DNA repair and recombination proteins [BR:
acyc03400
]
JI721_09080 (ligA)
Enzymes [BR:
acyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JI721_09080 (ligA)
DNA replication proteins [BR:
acyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JI721_09080 (ligA)
DNA repair and recombination proteins [BR:
acyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JI721_09080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI721_09080 (ligA)
MMR (mismatch excision repair)
DNA ligase
JI721_09080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JI721_09080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
HHH_3
RNA_pol_A_CTD
HHH_8
BRCT_2
Auto_anti-p27
zf-NADH-PPase
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
WDL99932
LinkDB
All DBs
Position
1954543..1956603
Genome browser
AA seq
686 aa
AA seq
DB search
MSKAEAAQRAKELRERIAYHNRRYYELDNPEITDAEWDALMRELLEIEAAHPDLVTADSP
TQRVGGRPAEGFAKVTHEVPMLSLSNAYSANELREFDARVREAVGASVRYVCELKIDGLA
VSLRYQAGRLVRGATRGDGVIGEDITANIRTIRSVPLQLTEPVDIEVRGEAYLPKPAFVR
LNAEREARGEPLFANPRNAAAGSLRQLDPRVAASRGLSLFTYTVVEAERFVDAHSEALRY
AASLGLPVNPEWRVFDVIDDVIAFVESWDTKRHELPYATDGMVIKVDSLTLQRQLGFTAK
SPRWAIAYKYQAEQAETVLRGIELSVGRTGAVTPTAIFDPVQLAGTTVSRASLHNEDLIR
ERDIRIGDTIVVQKAGDIIPEVVRSLPEMRKGDEVPFAMPQTCPQCGQPLVRLAGEAAWR
CVNPSCPALIRESIIHFASRDAMNIEGLGEQWVTQLLEHGLIHDVADLYALNREALMSLE
RMGEKSAANLLGAIERSKQNSLERLVFGLGIRLVGEKAARTLARSFGTLRNLMHASEDEL
QAIPEIGPKMAESIVRYFATPDVQRLVERLAEAGVNMVYRGRGGPASASESPAGASSWFA
GKTFVLTGTLETMDRKRAGELVESLGGKVTGSVSKQTDVLVAGEKAGSKLDKARALIASK
EKPELEILDEAAFLTKLREAGLDVED
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggctgaggcggcacagcgcgcgaaggagctgcgcgagcggattgcctatcac
aaccggcgttattatgaactggacaatccagaaatcaccgacgcggagtgggacgctctg
atgcgggaactgctggagattgaggcggcgcatccggatttggtgacggccgattctccg
acccagcgcgttggcgggcgcccggcggaagggtttgcgaaggtgacgcatgaagtcccc
atgctgtcgctgtccaacgcctatagtgcaaacgaactgcgggagtttgacgcgcgcgtg
cgcgaagcggtgggcgcgtctgtgcggtatgtgtgtgagttgaagattgacggactggcg
gtgtccttgcggtatcaagcggggcggctcgtccggggggcgacgcgtggagacggggtc
attggggaggacatcaccgccaacatccggaccattcggagcgtaccgctgcagttgaca
gagccggtggacattgaagtccgcggcgaggcgtacctgccgaaaccggcgttcgtgcgg
ctgaatgcagaacgcgaggcccgcggcgaacccctgtttgccaatccgcgcaacgcggcg
gcagggtcccttcggcagctggacccgagggtggccgcttcgcgcggtttgtccctcttc
acgtatacggtggtggaggcagagcggttcgtggacgcacactccgaggccctgcgatac
gcagcatcgctggggctgcccgtgaatccggagtggcgggtgtttgacgtcatcgacgac
gtcatcgcctttgtggaaagctgggacaccaagcgtcacgaactgccgtacgcgacagac
ggcatggtgattaaggtggacagcctcaccctgcagcgccagctggggttcacggcgaag
agtccccgctgggccatcgcctacaagtaccaggcggagcaggcggagacggtgctgcgg
ggcatcgaactcagtgtgggccgcacgggggcggtgacgccgacggccatttttgatccg
gtccagttggcgggtacgacggtctcgcgcgcttctttacataatgaggatttgattcga
gaacgggacatccgtatcggcgacacgattgtcgtgcaaaaggctggggacattattcct
gaagtcgtccgttccctcccggaaatgcgcaagggggacgaagttccgttcgccatgcca
caaacctgtccgcagtgcggccaacccctggtgcggctggcgggggaggctgcgtggcgg
tgcgtgaatccgtcgtgtccggcgctcattcgcgagagcatcattcactttgcctcgcgg
gatgcgatgaacattgaaggactcggtgaacagtgggtcacgcagctccttgaacatggg
ttaattcacgatgtcgctgacctgtacgccctcaaccgggaagcgctgatgtcgttggag
cgcatgggggaaaaatccgccgccaatctgctgggcgccatcgagcgaagcaagcagaat
tcgctggaacggctcgtgtttggcttgggcatccggctggtgggagagaaagcggcccgc
acgttggccaggtcctttggcacgctgcgcaatctgatgcacgcgtcggaagacgagctt
caggcgattccggaaatcggcccgaagatggcggaaagtatcgtccgctacttcgcgacg
ccagacgttcagcggctggtggaacgcctcgcggaagcaggcgtaaatatggtctatcgc
gggcgcggcggtccggcatctgccagcgaatcaccggcaggcgcctcttcctggtttgcg
ggaaagacgttcgtgttaacggggacgctggaaacgatggaccgcaagcgggcgggcgag
ttggtggagtcacttgggggaaaagtcaccgggagcgtcagtaagcaaaccgacgtactg
gttgctggtgagaaggctgggtcaaagctcgacaaagcccgcgcgctgattgcctccaaa
gaaaaaccggagctcgagattttggatgaagccgcgtttctgacgaagctgcgtgaagcg
ggactggatgtggaagactaa
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