Anser cygnoides (swan goose): 106030342
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Entry
106030342 CDS
T04896
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
106030342 (PCDH15)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
acyg03037
]
106030342 (PCDH15)
04515 Cell adhesion molecules [BR:
acyg04515
]
106030342 (PCDH15)
Cilium and associated proteins [BR:
acyg03037
]
Primary cilia and associated proteins
USH complex and associated proteins
106030342 (PCDH15)
Cell adhesion molecules [BR:
acyg04515
]
Cadherins
Protocadherins
106030342 (PCDH15)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Ig_Cad99C_N
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
CDH23_a-b
RET_CLD1
Ig_BT4661_3rd
Rv2386A
Motif
Other DBs
NCBI-GeneID:
106030342
NCBI-ProteinID:
XP_066856335
LinkDB
All DBs
Position
7:complement(22825304..23563998)
Genome browser
AA seq
2170 aa
AA seq
DB search
MLQRFCLWKWLAVGIALATVLAGSLAQNDEDCKLARTGPPATIVPIDEESRNGTILVDNM
LIKGTAGGPDPTIELSLKDNVDYWVILDPISQRLYLNSTGRVLDRDPPLSIQSIVVQVQC
INKKVGTIINHEVRIVVRDRNDNSPRFQQQQYYVAVNELTPVGTTIFTGFSGNNGATDID
DGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKTRYFVIVQANDRAQN
LNERRTSTTTLTVDVLDGDDLGPMFLPCVLVNNTRDCRPLTYQASLPELTDPAHVNPISV
TPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPQYFHMNLTTAELTLLKPINRDLHQK
FDLVIKAEQDNGHPLPAFANLHIEVLDENNQKPYFTKSTYEGFILESSPVGTTISDSQNL
TSPLQITVLDNDVEETKDPQLHLFLNDYNTFFTVTQSGITRYLTLLQPVDREAQQIYTFS
MTASDGVQESAPVTVNILVIDANDNSPTFSNISYNVKIYTDMRPGEGVIKLTAVDADEGP
NGQIVYEILAGDQGDFIINDRTGLITIAPGVVLSVGRSYALTVKASDSAPPAQRRSSITT
VYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLLNLQAFDREGDPIRYLIQNGDPQQV
FNLSQSSGLLALGKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGPIFDMF
LPKNLSVQEEEANAFVGQVRATDPDAGVNGQVHYSLANFNNLFRITSNGSIYTAVKLNRE
VRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCVPENLPPGTVFLQ
IEAKDVDLGSNVTYRIRTQEALQYFALNKYTGELSLLKSLDYESFSDTEATFTFLVEAFD
SKGTMPPGIATVTVRVKDMNDYSPVFSKKLYRGMVAPDAVKGTVITTVSAEDQDPPGTPA
SRVRYKVDVVQFPYSASIFDVEETSGRVVTRVNLNEEPSTVFKLVVIAYDDGDPVKSNTT
TVEIAVLQPSVIPRFTQDEYRPPPVSESAPKGTVVAVVMAAALNQTIVYSIVSGNEEDVF
AINNRTGVISVKKSLDYESVKSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDH
APVFTKKMYIGGVSEDAKMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGFVIEAY
TGLIKTAMLFKNMRRSYFKFQVIATDNYGKGLSSKADVLVSVVNQLDMQVIVSNVPPTLV
EQNKDQLIGILERYVQDQIPGATVVVESIGARRFGDGYSEEDYTKSDLMVYAIDPQTNRA
IMRNELFKFLDGKLLDINKEFQPYLGQGGRILEIRTPDVVANVKKQAQAVGYTEGALLAL
AVIIILCCMPAILIVMVSYRQRQAECAKTARIQMALPAGKPASTAANNLYEELGDSTILF
LLYHFQQSRGKKSVLEEGDRQRVISSFASRAIEAHKQSNINGSLNNNLPKSSSNITFLSD
ENPLTTQNPLYVEGVTQSPAAAGLLRKRNDALDTLSPMHLVLRDASLGGSHRAWTVPAHV
TKRHVPGSLSRPVIMDPIQWQQERLKAENEGTENQPSGDDLSSPLFQRISGPKLTVKEKA
RQFEQQALQEMKQVKSPDVKSIRSPTHSSCFQERENVLEQSPKSVVASPCLRSSPLSSPT
PCAEVVEPEPSTVPSVIITHHDYPEELSPPPTRKPTPPSFRIKKSVCQSFLAPQTKGEVA
ESIPDPPKIPPPPPPLLPPPPPSPPLLPPHPPALPPVSLSSSLLSTQHLSPAKHSKPPAK
QPAVLPPAPVPEPPPRRELKGILKNIQNLAAIEKSVANMYSQIDKNHVLPKHISKLKPVA
TPELPTPEAVAEHNQQNGSLSCVVEELEKRFPSQSTALRGYAQQEQQQLLRPSLLRPEEL
SMESGIDPGQEYYGQDYYSYEHGYELPQYGSRRRLLSPSGMYDEYGEVVVENDGGYYYSP
HGSTAEEWARKKRIKLIVDPEYETSSTGEDSAPDSSQRNRLNNPNIQNNVNGNIYIAQNG
SVVRTRRVCLANNLKVTSPVRLGKQFKKLDKLAVTHEENVPLNTLSKGPSSSDKMNTRPC
SVSFASSIGAENIVAKPGGSKMKSTEEQESVVDNEDVKEPLESHSEHTQSDEEELWMGPW
NNLHIPMTKL
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atgctacagcggttttgtctctggaagtggttagctgtagggattgcactcgctactgtc
ttagcgggttccttggcccagaacgatgaagattgcaaattggccagaacaggtcctcca
gccacaatagttcctatcgatgaagagagtcgtaacggcactatcctggttgacaatatg
ctgatcaaagggacagcaggcggcccagaccccaccattgaactctccttaaaggacaat
gtggattactgggtgatcctcgatcccatcagccagaggttgtacctaaacagcactggc
cgagttctggacagggacccgccactgtccattcaatccattgtggtgcaagtccagtgc
attaataaaaaggttggcaccattatcaaccatgaggtgcggattgtggtgagagacagg
aatgataactcacctcggttccagcagcagcaatactacgtggcagtaaatgagttaact
ccagttggaacaaccatctttacagggttttctggaaacaacggtgctactgacattgat
gatggtccaaacggccagatagaatatgtcatccagtacaatcctaatgataagacttcc
aacaggacctttgatattcctctcacgttgtctggagcagtagttctacgagagagacta
aattatgaagaaaagactcgttattttgtcattgttcaagcaaatgaccgagcccagaat
cttaatgagcgacggacaagtacaaccaccctcacagtggacgtgctcgatggggacgac
ttgggaccgatgtttcttccttgtgtcttggtgaataatacccgtgactgtagacctctc
acctaccaagcgagcttgccagaactgactgatcctgcacatgtgaaccctatcagtgtc
actccacccatacaagccatagatcaagaccgaaacatccagcctccttctgatcgaccg
ggcatcctctattccatcctagttggtactcccgaggattatccacagtatttccatatg
aatctcacaacagctgaactcacgctcctgaaaccaataaacagagatttgcaccagaag
tttgacttggttattaaggctgaacaagacaacggtcatcctcttcctgcatttgccaat
ttgcatattgaagtccttgatgagaacaatcagaagccttactttacaaagtctacatac
gagggttttatccttgaatcctccccagtgggaacaacgatctctgatagccagaatctg
acttctccattacaaatcacagtgttggacaatgatgtggaggagaccaaggatccccag
ctccatctcttcctgaacgattacaatacgtttttcactgtgactcagagtggcatcacc
cgctacctcaccctgctgcagcctgttgacagagaagcccagcagatatacaccttttcg
atgacagcttctgatggcgtacaggagagtgccccagtgacagtcaatatcctggtgatt
gatgcaaatgataattccccaaccttctccaatatatcatacaatgtcaagatttataca
gacatgaggcctggggaaggcgtaataaagctcactgctgtagatgcggacgagggaccc
aatggacagatagtgtatgaaattttggctggggatcagggagacttcatcatcaatgac
cgaacaggccttatcaccattgctccaggagttgtactgtcagtggggcgatcctatgct
ctcactgtcaaagcatctgatagtgctcctcctgcgcagagaaggagctctattactact
gtttacatcgaggtcctcccgcccaacaaccagagccctccccgctttccccagctgatg
tacagccttgaagtcagtgaggccatgagaattggagcagttttgttaaacctgcaggct
tttgatagagagggtgaccctataagatacctcattcagaatggagatcctcaacaagtt
tttaatctctctcaaagttctggactgctagccttaggaaagcccttggacagagaaagc
actgatcgctatattctgattgttacagcctcggatggcagaccagatgggacttcaact
gctactgttaatatagtggtgacggatgtaaatgacaatggaccaatttttgatatgttt
ctacctaaaaacctgtctgtacaggaagaggaagccaatgcttttgttggtcaagtaagg
gctaccgacccagatgcaggtgttaatggtcaagttcattatagtttggcaaatttcaac
aatcttttccgaatcacatcaaatggtagcatttacacagcagttaaattgaacagagaa
gtaagagactattatgaacttatcgttgaagcaacagatggagctgtggacccccgccgt
tcaacactaactttagcaatcaaggtgctggatattgatgacaacagccctgtctttact
aatgcttcctatactgtctgtgtgcctgaaaatctaccacctggcactgtcttcctgcag
atagaggcgaaggatgttgatcttggttctaatgttacctatcgaatacggacgcaggaa
gcactacagtattttgcactgaacaagtacacgggcgagttgtcacttctgaagtccttg
gattacgagtcattctccgacacagaagcaactttcacctttcttgtggaagccttcgat
agcaagggcactatgcctcccggtattgctactgtcacagtgagagtaaaggatatgaat
gattactcgccggtatttagcaaaaagctctacaggggaatggttgctcctgatgcagtc
aagggcaccgttatcactaccgtttcagctgaggatcaagatcctccgggcacaccagca
agtcgagtccgatacaaagtagatgttgtccagtttccttacagtgccagcatttttgac
gtggaggaaacttcagggcgtgtagtaacccgggtaaacctaaatgaagagccaagtacg
gtgtttaagctagtggtcattgcatatgatgatggagatcctgtgaagtccaacaccact
actgtagaaattgctgtactgcagccttcagtaattcctcgatttacacaggatgaatac
agacccccaccagtgagtgaaagcgcaccaaaaggaactgtggtcgcagttgtaatggca
gctgccttgaaccagactattgtatattcaattgtttcaggaaatgaagaagatgtgttt
gctattaataacagaacgggtgtgatctcagttaaaaagtctctggattacgaaagtgta
aaaagttacgaacttcgagttcaagcagactcattacaagtggtacgatccaatctgcgt
gtcccttccaaaagtaatacagccaaggtattcattgaagtgaaggatgaaaatgaccac
gcgcctgtctttaccaaaaaaatgtatattggaggtgtctctgaagatgctaaaatgttt
tcttctgtgcttaaagttaaggctgatgataaagacactgggaattacagtgccatgcag
tacaggctcatcattcctccaatcaaggatggtaaagaaggttttgtgattgaagcttac
acagggctaataaaaactgctatgctgttcaaaaatatgagaagatcctatttcaagttt
caggtcattgcaactgacaattatggaaaaggactgagcagcaaagcagatgtacttgtc
tctgtggtcaatcagttggatatgcaagtcatcgtctctaatgttcctcccacccttgtg
gaacaaaacaaagatcaactcatagggattttggaacgctatgtccaggatcagattcca
ggtgcgacagttgtggtggaatccattggtgcacggaggtttggggatgggtactctgaa
gaggattatacaaagtctgacctcatggtctatgcgatcgacccgcaaacaaatcgagct
ataatgaggaacgaactttttaagttccttgatggcaaactgctggatatcaataaagag
ttccagccgtacctgggacaggggggacgcatcctggagatccgcaccccagacgtggta
gcgaatgtcaagaagcaggcacaagccgtaggctacacggaaggtgcactcctcgctctg
gctgtcattatcatcctctgctgtatgccggctattttaattgttatggtcagctacaga
cagcgacaggctgagtgcgcaaagactgcaagaatccagatggccctaccggcaggcaaa
ccagccagcaccgctgccaacaacctctatgaagagcttggcgacagcaccattcttttt
cttctctaccatttccaacaaagcaggggaaaaaaatcagtcttagaagaaggagatcgt
cagagagttataagcagctttgcttcccgtgctattgaggctcacaagcaatctaatatc
aatggatcattgaacaataatctccccaaatcttcaagtaacattacttttttatctgat
gagaacccattaactactcaaaacccattgtatgtggaaggtgtcactcagagtcctgct
gctgctgggttactacggaaaagaaacgatgccctagatactctttctcctatgcactta
gtcttgagagatgcctccttgggaggcagtcaccgtgcgtggacggtaccagctcatgtt
accaaaagacacgtgcctggttctctgagcaggccggttatcatggaccccattcagtgg
caacaggaaagactcaaagcagagaatgaaggaactgaaaatcagcctagcggagatgat
cttagcagtccactgtttcaaagaataagtggccccaagttaactgtgaaagagaaggca
agacaatttgagcagcaggctttgcaggaaatgaagcaagtgaaatctcctgatgtgaaa
tccatccgttcaccaacacacagcagctgtttccaagaaagagagaacgtgctagagcag
tctcctaaaagtgtggttgcttctccttgccttcgctcttctcctctgtcctctccaaca
ccttgtgctgaagtagttgagcctgagccttccacggtcccctctgtaatcatcactcac
cacgactatcctgaagaactttctcctccaccaactcggaaaccaactcctccgtctttt
aggataaagaaatcagtttgccaaagttttctagctcctcagaccaaaggagaagttgca
gaaagcattccagatccacctaaaattcccccacccccacctccactgctgccacctcca
cctccatcccctcctctgttgccaccacatcctccagctctgccccccgtgtctctttct
tcatctcttcttagcacccagcacctctcccctgcaaagcattcaaaaccccctgccaaa
cagccagctgtactgccaccggccccagtgccagagccacctccccgtagggagctgaaa
ggtattcttaaaaacattcagaatttagcagcaattgaaaagtccgtggccaacatgtac
agccaaatagacaaaaaccacgttctgcccaagcacatttctaagctcaaaccagttgca
acaccagagctgccaactccagaggcagtggctgagcacaaccagcagaatggcagcttg
agctgtgttgtggaggagcttgagaaacgctttccatcccagtcgacagcactgcgagga
tatgcacagcaagagcaacagcagttgctgagaccttctcttctcagaccagaggaatta
agtatggagtctggaattgatccagggcaggaatactatgggcaagattactacagttat
gagcatgggtatgaactgcctcagtatgggagccgccgcagactgctgtctccttcgggg
atgtacgatgagtatggggaagttgtggtggagaacgatggtggctactactacagccca
catggatcaacagcagaagagtgggccagaaagaaaaggatcaagttgatagttgaccca
gagtatgagaccagctccactggagaagacagcgctcctgattccagccagaggaatcgt
cttaataaccccaatattcaaaacaacgtcaatggtaacatctacattgcacagaatggc
tctgttgtcagaacccgtcgtgtttgccttgctaataatttaaaagtcacatctccagtg
aggctggggaaacaattcaagaaactggacaagcttgcagtgacacatgaggagaatgtc
ccactgaacacattgtcaaagggaccatcttctagtgataaaatgaacacgaggccttgt
agcgtctcatttgcttcctctataggggccgaaaacatagtagcaaagccaggcggctcc
aaaatgaaaagcacagaagagcaggaatcagttgttgataacgaggatgtcaaagagccc
ttggagtcacacagtgaacacacacagtcagatgaagaggagctctggatgggcccttgg
aataatcttcacataccaatgacaaaactgtga
DBGET
integrated database retrieval system
