Anser cygnoides (swan goose): 106044893
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Entry
106044893 CDS
T04896
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
acyg
Anser cygnoides (swan goose)
Pathway
acyg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106044893 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acyg03400
]
106044893 (LIG4)
Enzymes [BR:
acyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106044893 (LIG4)
DNA repair and recombination proteins [BR:
acyg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106044893 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
106044893
NCBI-ProteinID:
XP_047936745
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All DBs
Position
1:150733638..150737697
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AA seq
912 aa
AA seq
DB search
MASPPAPQPSPRRTVASHVPFADLCATLERMQACKSRPEKTKYFKDFLDSWRNFHHALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNATRNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGISQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERIQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHKVFKDNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEALSKRYEILSNVFTPVTGRIHVVHKKTARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAIAETPAPNEKPTVFHSICRIGSGYTMKELYDLGLKLAKHWKPYHRRDPP
CNILCGIEKPEVYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLADLRSRAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSNVNKV
SNVFEDVEFCVMTGTGKHSKSELESRIAECGGSVVQNPGPDTYCVIAGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAVMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKDNKMMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAIVNEPRTKIHGTRLS
IRALELRFHGAKVVSCLEEGVSHVIIGEDHSRVEEMKALRRTFGKKFKIVSELWVTESVK
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccgcccgccccgcagccgtctcctcgcaggacggtcgcctcgcacgtgccc
tttgcggatctgtgcgccaccctggagcggatgcaggcctgcaagtcccggccggagaaa
accaagtatttcaaggacttcctggactcgtggaggaacttccaccacgctcttcaccag
aaggagaaggacgtcaccgattcgttttatccggcgatgcgactcattctcccgcagttg
gagagggaaaggatggcgtatgggattaaggaaaccatgctcgcgaagctgtacattgag
ctgctcaatttgccaaaagatgggaaagacgctgcgaagcttttaaactacaggacacct
gccggttcgcgtggagatgctggagactttgccatgattgcatactttgtgttaaaacct
aggagccccaaacgaggcaggctgacagtggaacaggtcaacgaactgttagatgccata
gctaacaacaatgctactagaaacaaggggctgttaaagaaaagccttcttcagttaatt
acccagagcacagcgcttgagcaaaagtggctcatccggatgattataaaggatctaaaa
ctgggcattagtcaacaaactatattttccatttttcaccccgatgctgttgaattacac
aatgtcacgacagatttggaaaaagtttgtagacaattgcatgatcccactgtctcactt
agcgatgtttctatcatgttattttctgcctttaagccaatgcttgctgctattgccgat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaaactggat
ggtgaacgtatacagatgcacaaagacggcgatgtgtataaatatttttctagaaatggg
tttgactatacgcagcaatttggcgcttccccccttgatggctcactaacgccatttatt
cataaggtatttaaagacaacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaaccttcatgcaaaaaggaaacaaatttgacataaaacgaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtgctgatggttaacgatcag
aagttgggtcatgaagcgctgagcaaaaggtacgagatcttaagcaatgtatttacccca
gtaactggcaggatacatgtcgtacataaaaaaactgccagaacgagaaaagaagtaatt
gatgctttaaatgaagcgatcgataacagagaggaagggattatggtcaaggatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacgtc
aatgggctgatggacgagcttgaccttctgatcgttggtggttactggggaaagggctta
cgtggtggaatgatgtctcattttctgtgtgcgattgcagagactccggctccaaatgaa
aaacctactgttttccactctatttgtcgcattggctctggctacactatgaaggagttg
tatgatctgggtttgaaactggctaaacactggaagccctaccataggagggaccctccc
tgtaatattttgtgtggcattgaaaaacctgaagtgtacattgaaccttgtaactccgtc
atcgttcaggtcaaggcagctgagattgttaacagcgatatgtacaaaactgactgtacc
ttgagatttccccgaattgagaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctcgcagatctcagaagtagagcagaggggaagctggcgtccaagcacctt
catattgacgaatacgatgagccgcaagagaagaaaaggaaaactgtatcgaaggtgaag
aaggtaatcggaatagccgagcagtttaaagctcctgatctttccaatgtaaacaaggtt
tcaaatgtgtttgaagacgtagagttttgtgttatgacaggcacaggaaaacactccaaa
tctgagctggaaagccgaatagccgaatgtggtggcagcgtggtacagaaccctggacca
gacacttactgtgtcattgcgggagctgagaacgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgaaggcagagtggcttctgcagtgttttcagtccaaaatgctt
gtaccttggcagccagccgttatgattcacatgtcccctgacactaaagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtattctcaagaatgaaggataataagatgatgcccttggacgtgattgctgagtta
gaagaacgttactcatggaacagctgtcaactcagtatattcagaggaaacactatttat
gtggactgttatgctattgttaacgaacccagaaccaaaatccacggaacaagactatca
attagagctttggagctccgttttcatggtgcaaaagtagtgtcttgccttgaagaaggt
gtctcccatgtcattataggagaagatcattcccgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcagtgaag
gaaggagtcccaaagaatgaaaatcagtacttgatttaa
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