Amycolatopsis cynarae: ORV05_25820
Help
Entry
ORV05_25820 CDS
T09969
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acyn
Amycolatopsis cynarae
Pathway
acyn03030
DNA replication
acyn03410
Base excision repair
acyn03420
Nucleotide excision repair
acyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ORV05_25820 (ligA)
03410 Base excision repair
ORV05_25820 (ligA)
03420 Nucleotide excision repair
ORV05_25820 (ligA)
03430 Mismatch repair
ORV05_25820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acyn03032
]
ORV05_25820 (ligA)
03400 DNA repair and recombination proteins [BR:
acyn03400
]
ORV05_25820 (ligA)
Enzymes [BR:
acyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ORV05_25820 (ligA)
DNA replication proteins [BR:
acyn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ORV05_25820 (ligA)
DNA repair and recombination proteins [BR:
acyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ORV05_25820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ORV05_25820 (ligA)
MMR (mismatch excision repair)
DNA ligase
ORV05_25820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ORV05_25820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WAL69818
LinkDB
All DBs
Position
complement(5403131..5405227)
Genome browser
AA seq
698 aa
AA seq
DB search
MSDVPAEVRERHGALAEEIRGHQFRYYVLDAPTISDGQFDELMHRLERLEAEYPGLVTPD
SPTQNVGGTFSTEFAAHDHLERMLSLDNVFDTEEMLAWIDRVEREVGGSTQYLCELKIDG
LAVNLLYERGRLTRALTRGDGRTGEDVTLNVRTLEQVPDTLTGTDEYPVPELIEVRGEVF
FRVEDFLDLNAKLVEAGKSPFANPRNTAAGSLRQKDPRVTRSRRLRMICHGLGRRDGFEP
ERQSQSYEALAAWGLPVSAHTKVFDTAKEVLAHIGYWGEHRHDAEHEIDGVVIKVDQVAL
QRRLGTTSRAPRWAVAYKYPPEEANTKLLDIQVNVGRTGRVTPFAVMEPVKVAGSTVAMA
TLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVEVRTGEEREFVMPTRCPECGTPLA
AQKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEVLGYEAASALLESGVVADEGDIF
ALDEEKLRQVELFRTKSGELSANAGKLLANLETAKDRPLWKVLVALSIRHVGPTAAQALA
REFGSLEAIEAADETALADVDGVGPTIAAAVREWFTVDWHREVVAKWRRAGVRMAEERDE
SIPRILEGLSIVVTGSLTGFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKA
VQLKVPVLDENGFRVLLEKGPEAAAEVALPAEGEQTGE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgttcccgccgaggtgcgggaacggcacggtgcgctggccgaagagatccgc
ggccaccagttccgctactacgtgctggacgcgcccaccatctccgacggccagttcgac
gagctcatgcaccggctcgaacggctcgaggccgagtacccaggcctggtcacccccgac
tcgccgacgcagaacgtgggcggcaccttctccaccgagttcgccgcccacgaccacctc
gagcgcatgctcagcctcgacaacgtgttcgacaccgaggagatgctggcctggatcgac
cgggtcgaacgcgaggtcggcggctcgacgcagtacctgtgcgagctcaagatcgacggc
ctcgccgtcaacctgctctacgagcgcggcaggctcacccgcgcgctgacccgcggcgac
gggcgcaccggcgaggacgtcacgctcaacgtgcgcaccctggagcaggtgccggacacg
ctcaccggcaccgacgagtatccggtgccggagctgatcgaagtgcgcggcgaggtgttc
ttccgggtcgaggacttcctcgacctcaacgcgaagctggtcgaggcgggcaagtcgccg
ttcgcgaacccccgcaacaccgccgccggttcgctgcgccagaaggatccccgcgtcacc
cgcagccgccgcctgcggatgatctgccacgggctgggcaggcgggacggcttcgagccc
gagcgccagtcgcagtcgtacgaggcgctcgccgcctggggcctgccggtgtccgcccac
accaaagtgttcgacaccgccaaggaggtgctggcccacatcgggtactggggcgagcac
cggcatgacgccgaacacgagatcgacggcgtggtgatcaaggtcgaccaggtcgccctg
cagcgccgcctcggcaccacctcacgcgccccgcgctgggccgtggcgtacaagtacccg
ccggaagaggccaacaccaagctgctcgacatccaggtcaacgtcggccgcaccgggcgg
gtcaccccgttcgcggtgatggagccggtgaaggtggccgggtccacggtcgcgatggcc
accctgcacaacgccgaggaggtcaagcgcaagggcgtcctgatcggcgaccgggtggtg
atccgcaaggcgggcgacgtcatccccgaggtgctcggcccggtggtcgaggtgcgcacc
ggcgaggagcgcgagttcgtgatgccgacgcggtgcccggagtgcggcaccccgctggcc
gcgcagaaggagggcgacgtcgacatccgttgccccaacgcccggtcctgcccggcccag
ttgcgggagcgcctgttccacctggcgggccgcggcgccttcgacatcgaggtgctcggc
tacgaggcggcgagtgcgctgctggagtcgggtgtggtggccgacgagggcgacatcttc
gccctggacgaggagaagttgcggcaggtcgagctgttccgcaccaagtcgggggagctt
tcggcgaacgcgggcaagctgctggccaacctggaaacggcgaaggaccggccactgtgg
aaggtgctggtggcgttgtccatccggcacgtcggaccgaccgcggcccaggcgctcgcc
cgcgaattcggttcgctggaagcgatcgaggcggccgacgagacggcgctggccgatgtg
gacggtgtcggcccgacgatcgcggcggccgtgcgcgagtggttcaccgtggactggcac
cgggaggtggtggccaaatggcggcgggccggggtgcggatggccgaggagcgcgacgaa
tccatcccgcgcatcctggaggggctgtccatcgtggtgaccggatcgctgaccggattc
tcccgggacgaggccaaggaggccatcatggcccgcggcggcaaggcggccggttcggtg
tcgaagaagacggccttcgtggtggtcggggacgcgcccgggtccaagtacgacaaggcc
gtgcagctgaaggtgccggtcctggacgaaaacggtttccgggtgctgctggaaaaggga
ccggaggcggcggcggaggtcgcactgcccgccgagggtgagcagaccggtgagtga
DBGET
integrated database retrieval system
