Alicyclobacillus dauci: NZD86_19910
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Entry
NZD86_19910 CDS
T08679
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adau
Alicyclobacillus dauci
Pathway
adau03030
DNA replication
adau03410
Base excision repair
adau03420
Nucleotide excision repair
adau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NZD86_19910 (ligA)
03410 Base excision repair
NZD86_19910 (ligA)
03420 Nucleotide excision repair
NZD86_19910 (ligA)
03430 Mismatch repair
NZD86_19910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adau03032
]
NZD86_19910 (ligA)
03400 DNA repair and recombination proteins [BR:
adau03400
]
NZD86_19910 (ligA)
Enzymes [BR:
adau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NZD86_19910 (ligA)
DNA replication proteins [BR:
adau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NZD86_19910 (ligA)
DNA repair and recombination proteins [BR:
adau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NZD86_19910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NZD86_19910 (ligA)
MMR (mismatch excision repair)
DNA ligase
NZD86_19910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NZD86_19910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
Nlig-Ia
HHH_3
PTCB-BRCT
HHH_8
RNA_pol_A_CTD
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WAH39289
LinkDB
All DBs
Position
complement(3958125..3960155)
Genome browser
AA seq
676 aa
AA seq
DB search
MTFEEAQSRVQELRDEIEYHNQRYYQEDNPSITDAEWDALMRELIHLETTFPELQSPSSP
TQRVGAPVSEGFVKVEHEIPMLSLSNAYSTEELREFDRRVRQVVGDDVRYVCELKIDGLA
VSLRYEDGQLVRGATRGDGDVGEDITSNIRTIRNVPLALKEPVTLEVRGEAYMPKQSFAK
LNEQREQQGEPLFANPRNAAAGSLRQLDPRIAASRRLGVIIYQLAQADRYPVERHSEALE
YVKSLGLPANGERQVCNDIDEVIAYIEAWGEQRRSLSYATDGMVIKVDDIALQQELGFTA
KSPRWAIAYKYAAEQAETTLRRIDLNVGRTGAVTPTAIFDPVQLAGTTVSRASLHNEDLI
HEKDIRVGDRIVVQKAGDIIPEVVRSLPEKRTEDVVPFSMPHDCPQCGEPLHRLPDESAW
RCVNPNCPALIREGLIHFVSRDAMNIDGLGEQWITILLDRRMVTTVADLYRLTKNDLLSL
ERMGEKLADKLLHSIEVSKGNSLERLLFGLGIRLVGEKAAKTIAQVFLSMDALEKASVDD
LVAIPDIGPKMAESIVTYFQAPGPQQLIEELRALGLNMTYLGQTAAKVESVFTGKTVVLT
GTMATVDRKQATEWIERLGGNASGSVSAKTDFVVAGEKAGSKLEKARSIIASGKNPELRI
LDEDAFLQIVDEAGLR
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgaagaggcacagtcccgtgtgcaagaactgcgcgatgagatcgagtatcac
aatcagcgctactatcaggaggataatccgtcgatcacggacgctgaatgggatgcgctg
atgcgagaactcattcatttggagacgacatttccggagctccaaagccccagctctccg
acacagcgtgttggggcacctgtctcagagggatttgtcaaagtggaacacgaaatcccc
atgctctccttatcgaacgcctactcgactgaagagttgagagagtttgatagacgtgtt
cgacaagtcgtgggagatgatgttcgctacgtgtgcgaactcaaaattgacgggcttgcc
gtttccttgcggtacgaagacggtcaacttgttcgcggggcgacacgcggtgatggtgac
gtcggggaagacatcacatccaacatccgaaccatccgaaacgtgcctttggctttgaaa
gaacccgttacactggaagttcgcggtgaggcgtacatgccaaaacagtcgttcgccaag
ctcaatgaacagcgggagcaacagggagagccactgtttgcgaatcctcgcaatgctgct
gcgggctcgctgcggcagttggacccgcgcattgcagccagccgtcggctcggcgtcatc
atctatcaattggcgcaggctgatagatacccggtcgaacggcacagtgaagcactcgag
tacgtcaaatccctggggcttccggcaaacggtgagcgccaagtctgcaacgatatcgac
gaggttatcgcatatatcgaagcgtggggagaacagcggagaagcttgtcttacgccacg
gacggcatggtcatcaaggttgatgatatcgccctccaacaggagctcgggtttacggcg
aagagcccgcgttgggccattgcatacaagtatgcggcggagcaggcggagacgactttg
cgacggatcgacttgaatgtcgggcgcaccggtgccgttacgccaacagccattttcgat
cccgttcaactagccggcacaaccgtttcccgtgcatccctacataatgaagatttgatt
cacgagaaggatatccgcgtgggagataggattgttgtgcaaaaggcgggcgacatcatt
ccggaggtcgttcgttcattgccggaaaagcggacagaagacgttgtcccattttccatg
ccacatgattgcccgcagtgcggcgagcctttacatcgactgccggatgaatccgcgtgg
cgctgcgtcaatccgaattgtccagcacttattcgtgaggggctgattcactttgtgtcg
cgtgacgccatgaatatcgacggcttgggagaacagtggattaccattctcttggacaga
cggatggtaacgaccgtggccgacctgtatcggctcacgaagaacgacctgttaagcctc
gaacggatgggtgagaagctagcggataagcttctccattccattgaagtcagtaaaggc
aactcgctcgaaaggttgctgtttggcctgggtatccgattggttggggagaaggcggcc
aaaaccatcgcccaagtatttctctcgatggatgcccttgaaaaggcatccgtggacgat
ctcgtcgccatcccagacatcggaccgaaaatggcggaaagcatcgttacgtactttcag
gcacccggtccgcagcaactgattgaagaactgcgggcactggggctcaacatgacatat
ctaggtcagacagctgccaaggtcgagagcgtgtttacgggtaagaccgttgttttaact
ggcacaatggcgacggtggatcgaaagcaggcaacggagtggatcgagcggctgggtgga
aacgccagcggtagtgtgagtgcgaaaacggactttgttgtcgcgggggaaaaagcggga
agtaagttggaaaaagcgagatccatcattgcatccgggaaaaatccggaattgcggatt
ttggatgaagatgcgtttttgcagattgtcgacgaggcaggtttgcggtag
DBGET
integrated database retrieval system
