Aeromicrobium duanguangcaii: NP095_10285
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Entry
NP095_10285 CDS
T09547
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adb
Aeromicrobium duanguangcaii
Pathway
adb03030
DNA replication
adb03410
Base excision repair
adb03420
Nucleotide excision repair
adb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP095_10285 (ligA)
03410 Base excision repair
NP095_10285 (ligA)
03420 Nucleotide excision repair
NP095_10285 (ligA)
03430 Mismatch repair
NP095_10285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adb03032
]
NP095_10285 (ligA)
03400 DNA repair and recombination proteins [BR:
adb03400
]
NP095_10285 (ligA)
Enzymes [BR:
adb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NP095_10285 (ligA)
DNA replication proteins [BR:
adb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP095_10285 (ligA)
DNA repair and recombination proteins [BR:
adb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NP095_10285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP095_10285 (ligA)
MMR (mismatch excision repair)
DNA ligase
NP095_10285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NP095_10285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_lig_T4_1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UUI67591
LinkDB
All DBs
Position
complement(2086884..2089169)
Genome browser
AA seq
761 aa
AA seq
DB search
MAESREEAVPEEDPGVEAARAEAAELTEQIEGARNAYYGQDTSLVDDATYDGWMHRLEEL
ERLHPELQGQDSPTINVGAATGASALPPIEHAERMLSLDNVFSPDELREWCAKTQRAAGR
QVRWLTEAKIDGLAINLRYENGVLTSAATRGDGRVGEDVTVNAVRVEGIPEKLAGEGHPP
LVEVRGEVFIGIEEFERLNAFQAELRERATAEAMARGVSEERATASAARKFPAFANPRNA
ASGGLRQQLDKKSGLELEAGQERIAVLALYVHGIGAWERPPVSAQSEVYDLLQQWGLPTS
PNTRVLDSVDDVLARVEELGGQRHSLQHEIDGLVVKVDELALHPELGETSRAPRWAIAYK
YPPEEVQTTLLDIVVSVGRTGRATPYARMEPVRVAGSVVRQATLHNQDVVKAKGVLIGDT
VVLRKAGDVIPEVLGPVVERRDGSEHAFVMPEKCPECGTPLRPMKEGDKDLRCPNARTCP
AQVRGRVEHVGSRGALDIEALGEVTAAALTQGKGAPLDSEAGLFSLTIDQLVPIEVEVRD
AETGEPKLDDKTGEPVVRTPFRVKTGDPSKQAQVLLDELEKAKTKDFWRQLVSLNIRHVG
PVAARALAQYFGSIEAIRAASREELAAVEGVGGIIADSVIEWFEVDWHVEIVDQWKAAGV
RFAIPDHPGPGAASTAGGVLDGLTVVVTGGLEDFTRDSVKEAIIAAGGKASGSVSKKTDY
VVVGENAGSKAAKAEELGLTILNEAQFKKLLAGGPDALAGD
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcgcgtgaggaagcagtgcccgaggaagatccgggggtcgaggcggcccgt
gccgaggccgccgagctgaccgagcagatcgagggcgcacgcaacgcctactacggtcag
gacacctcgctggtcgacgacgccacgtacgacggctggatgcaccgcctggaggagttg
gagcggctccaccccgagctgcagggccaggactcgccgaccatcaacgtgggtgcggcc
actggggcctcggcgctgccgccgatcgagcacgccgagcggatgctcagcctcgacaac
gtcttctcgcccgacgagctgcgcgagtggtgcgccaagacccagcgcgcggccggccgc
caggtgcgctggctcaccgaggccaagatcgacggcctggcgatcaacctgcgctacgag
aacggcgtgctcacgtcggccgccacccgcggcgacggtcgcgtgggcgaggacgtcacc
gtcaacgcggtccgggtcgagggcatccccgagaagctcgcgggcgagggccacccgccc
ctggtcgaggtgcgcggtgaggtcttcatcggcatcgaggagttcgagcgcctcaacgcc
ttccaggccgagctgcgcgagcgggccaccgccgaggcgatggcccgcggcgtcagcgag
gagcgcgccaccgccagtgccgcccgcaagttcccggccttcgccaacccccgcaacgcg
gccagcggcggtctgcgccagcagctcgacaagaagtccgggctcgagctggaggccggg
caggagcgcatcgccgtgctggccctctacgtgcacggcatcggcgcgtgggagcgtccg
ccggtctcggcccagagcgaggtctacgacctgctccagcagtggggcctgcccaccagt
ccgaacacgcgcgtcctcgacagcgtcgacgacgtgctggcgagggtcgaggagctcggc
ggtcagcgccactcgctccagcacgagatcgacggactcgtggtcaaggtcgacgagctc
gccctgcaccccgagctcggcgagaccagccgcgccccgcgctgggcgatcgcctacaag
tacccgcccgaggaggtccagacgacgctgctggacatcgtcgtctcggtcggacgcacc
gggcgtgcgacgccgtacgcccggatggagccggtccgggtggccggcagcgtcgtgcgg
caggccaccttgcacaaccaggacgtggtcaaggccaagggcgtgctgatcggcgacacc
gtcgtgctgcgcaaggccggcgacgtcatccccgaggtgctcggtccggtcgtcgagcgt
cgcgacggcagcgagcacgccttcgtcatgcccgagaagtgccccgagtgcggcaccccg
ctgcgcccgatgaaggagggggacaaggacctgcgctgcccgaacgcgcgcacgtgtccc
gcccaggtgcgcggccgggtcgagcacgtcggctcgcgcggcgcgctcgacatcgaggcg
ctcggcgaggtcacggcggccgcgctcacccagggcaagggcgccccgctcgactccgag
gccggactgttctcgctcacgatcgaccagctcgtgccgatcgaggtcgaggtgcgcgac
gccgagaccggcgagccgaagctcgacgacaagaccggcgagcccgtcgtccgcaccccg
ttccgagtcaagaccggcgacccgtccaagcaggcccaggtgctgctcgacgagctcgag
aaggccaagaccaaggacttctggcgtcaactggtgtcgctcaacatccgccacgtcggc
ccggtcgccgcgcgagcgctggcccagtacttcggctcgatcgaggcgatccgggccgcg
tcccgcgaggagctggcggcggtcgagggcgtcggcgggatcatcgccgactcggtcatc
gagtggttcgaggtcgactggcacgtggagatcgtcgaccagtggaaggccgccggggtc
cgcttcgcgatccccgaccatcccggcccgggtgcggcgtcgacggccgggggcgtgctc
gacggcctcaccgtcgtggtcaccggcggtctcgaggacttcacccgggactccgtcaag
gaggcgatcatcgccgccggcggcaaggcctcgggctcggtcagcaagaagaccgactac
gtcgtcgtgggcgagaacgcgggctccaaggctgccaaggccgaggagctcggcctgacc
atcctcaacgaggcgcagttcaagaaactgctcgccggaggtccggacgctctcgccggg
gattga
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