Abiotrophia defectiva: FOC79_02165
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Entry
FOC79_02165 CDS
T06623
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adc
Abiotrophia defectiva
Pathway
adc03030
DNA replication
adc03410
Base excision repair
adc03420
Nucleotide excision repair
adc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOC79_02165 (ligA)
03410 Base excision repair
FOC79_02165 (ligA)
03420 Nucleotide excision repair
FOC79_02165 (ligA)
03430 Mismatch repair
FOC79_02165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adc03032
]
FOC79_02165 (ligA)
03400 DNA repair and recombination proteins [BR:
adc03400
]
FOC79_02165 (ligA)
Enzymes [BR:
adc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOC79_02165 (ligA)
DNA replication proteins [BR:
adc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOC79_02165 (ligA)
DNA repair and recombination proteins [BR:
adc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOC79_02165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOC79_02165 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOC79_02165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOC79_02165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
UPF0758_N
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QKH46487
LinkDB
All DBs
Position
complement(483027..485042)
Genome browser
AA seq
671 aa
AA seq
DB search
MKMPSQNLQARLEEVKHLLNDYAYHYYVLDQSLVSDASYDALYRELEEIEAAHPEWITPD
SPTQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERVTQQVEGPVSFMCECKIDG
LAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNLSVEVRGECYMPKAVF
LALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEFHPESQAGL
FAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHIDQQQALGF
TVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQRASLHNVD
LIESLDVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLAIPTHCPECQTALVRQGEEV
ALRCPNLVCPAQRLALLSHFVSRGAMNIQGLGPRILNQLVASQAVTELDDLYRLSLEDLL
SLDKIQEKSAQKLLAAIEASKSNSAERLLFGLGIRHVGAKAARLVLQVFGDLNRLSQATA
EEIGAIEGVGPIISQSLVQYLTLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFW
LGKTVVLTGTMESYSRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVT
ILDEASFLANL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgccaagccaaaaccttcaggcacgccttgaagaagtcaagcacttattaaat
gactatgcctaccattactatgttctagaccaatccctggtcagtgacgcaagctacgat
gccctctatcgggaactggaagaaattgaagcggcgcatccagagtggattacgccggat
tcgcctacccaacgggtcggagaccagctcttagaaggctttagtaaagtggctcacgca
gaatccatgtatagtctaggcaatgccttcagtccggaagaagtgacacaatttattgag
cgggtgacccaacaagtcgagggccctgtctccttcatgtgtgaatgtaaaattgatggc
ttagccattgcccttacctaccaggatggtgtctttgtgcgtggcgccacgcggggggat
gggacaattggcgaagacatcacccagaatcttcgtaccattcgctccttgcctctacgt
ctaagacaaaatctgtcagtagaagtgcgtggtgaatgttacatgccaaaggctgttttc
cttgcacttaacgaggaacgcgaagcccaaggccaagaaatctttaagaatccccgcaat
gcggcggcgggcggcttacgtcagttagacccgcgcgcggtggccgaccgccaactcaat
atcttcctctacagtgcagtctatacagatgaattccatccagagagccaggccggtctc
tttgcggcctttgagcaattgggcttacggaccaatccgctcagacgcgaatgtcagacg
gctgaagaagtgattgactatatccaaatgattggccagcagcgccatgacttaccttat
gagattgatggcgtggttatcaaggttaaccacattgaccaacaacaggccttaggcttt
acggtcaaagcaccacgctgggctatagcctataaattcccggctgaagaagcagtgacc
accctacgtgaggtggaatggaccgtggggcggacgggtgtcgtgacaccaactgccatt
atggatcccgtgccgttggcggggacaacggtccaacgtgctagtctccacaatgtggac
ttgattgagagcctggatgtgcggattggagaccaagtcacgattcataaggcgggcgac
attattcctgagattacctcagtgcttttagccaaacggccccaagacagtcagcccctg
gccattccgactcattgtccggaatgtcagacggccttagtacgtcagggtgaagaagtg
gctttacgctgtcctaacctggtctgtccggcccaacgcctagccctcttgagccacttt
gtctcacggggtgccatgaacatacagggcttgggaccgcgcattctcaaccaactagtc
gctagtcaggcagtcacagaattggatgatctctatcgtttgagcctagaggacctctta
agtttggataaaatacaagaaaaatccgcccagaaattactggctgctattgaagccagt
aagtccaactccgctgagcgcctgctcttcggtttgggcattcgacatgtgggcgccaag
gcggcgcgcttagtcttgcaagtctttggtgatttgaatagattaagccaggcgactgcc
gaggaaattggggccattgaaggagtcgggccaattatcagccagtctctagtgcaatat
ctgaccttggaatccagtcaagccatgcttaaacgcctggcagaggcaggcgttaacttg
acctatcaggggccgcagcctcttgaagtggcgcaaggtgagacagccaatgatttctgg
ttaggcaaaacggttgtcctgaccgggaccatggaaagctactcacgttctgaagccaag
gagctcttagaagcgcggggagctaaggtcaccggtagtgtctctaagaagaccgattat
ttggtggccgggcaggaagccggaagcaaattaagcaaggcggagtccttgggtgtgact
atccttgacgaagccagtttcttagcaaatctataa
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