Alloalcanivorax dieselolei: B5T_01775
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Entry
B5T_01775 CDS
T02259
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adi
Alloalcanivorax dieselolei
Pathway
adi03030
DNA replication
adi03410
Base excision repair
adi03420
Nucleotide excision repair
adi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B5T_01775 (ligA)
03410 Base excision repair
B5T_01775 (ligA)
03420 Nucleotide excision repair
B5T_01775 (ligA)
03430 Mismatch repair
B5T_01775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adi03032
]
B5T_01775 (ligA)
03400 DNA repair and recombination proteins [BR:
adi03400
]
B5T_01775 (ligA)
Enzymes [BR:
adi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B5T_01775 (ligA)
DNA replication proteins [BR:
adi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B5T_01775 (ligA)
DNA repair and recombination proteins [BR:
adi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B5T_01775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B5T_01775 (ligA)
MMR (mismatch excision repair)
DNA ligase
B5T_01775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B5T_01775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
Zn_ribbon_PADR1
RNA_ligase
PTCB-BRCT
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
AFT70052
UniProt:
K0CEF8
LinkDB
All DBs
Position
1917167..1919581
Genome browser
AA seq
804 aa
AA seq
DB search
MTSPKTPSPAEQIKQLRDQLNDWSYRYYVLDDPAVPDPEYDRLFRQLQVLESERPDLISP
DSPTQRVGDVPLDGFNEVRHAVPMLSLGNAFNDEELRDFDQRVRERLDVSGSIDYVAEPK
LDGLAVSLVYENGELVRGATRGDGETGEDITANVRTIKSIPLRLRGDKPPALMEVRGEVV
MTHHGFAELNRRQAEAEQKTFANPRNAAAGSLRQLDSRITAQRPLEFYAYSLAQLEGENW
PDRHSAILERLRQWGLRVNPEVKLCDGVDALLAFYQDILARRDQLDYDIDGVVYKVDRLD
WQRDLGFVSRAPRWAIAHKFPAQEEITVLNEVDWQVGRTGALTPVAKLEPVQVGGVTVSN
ATLHNLDEIRRLGIRIGDSVIIYRAGDVIPKVVGKVQERSPADPQVFKGGESAAIRQVGP
FVRIPRECWLSPRYADQRAPQAPRHCPVCDSQVIRKRGEVAYRCTGGLICGAQQREAIKH
FASRRAMDIEGLSIKRVDLLVDQGLVSNVADLYRLKAEDIADLERMGEKSAANLIEALAH
SRTVSLERFLFALGILQIGEETAKALADCFGDLETIRRAPLLLFLAVPDVGLEVAKAIHA
FFREQHNEDVIDGLLAEGVQPRANGHPSAAFVRELTLGYFLKAAKRLGMALDGVGEKSLE
TLGGHYKTVAALAEADADDAPVRPAMLEQVHKALGQDDWRQRLEQAEALASELSEKAPRE
TAEQALEGQTWVLTGTLSRLTRDQAKAHLQSLGAKVAGSVSKKTHCVVAGEAAGSKLSDA
EKLEVEVMDEDTFVDFLAGHGITL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcgccgaaaaccccgtctcccgccgagcaaatcaaacaactgcgggaccagctc
aacgactggtcttaccgatactacgtgctggacgatcccgccgttcccgaccccgaatac
gaccgcctgttccgtcagttgcaagtgctggaaagcgagcgtcccgacctgatcagcccg
gattcgccaacgcagcgggtaggggacgtgccgctggacggcttcaacgaagtgcgtcat
gccgtgcccatgctgagcctgggcaatgccttcaatgacgaggagctgcgtgacttcgac
cagcgcgtccgcgagcgtctggatgtgagcggcagcatcgactatgtcgccgagcccaag
ctcgatggcctggcggtgtcgctggtctatgagaacggcgagttggtgcgcggcgccacc
cgtggcgacggtgaaaccggcgaggacattaccgccaacgtgcgcaccatcaagtccatc
ccgctgcgcctgcgtggcgacaagccgccggccctgatggaagtgcgcggcgaggtggtg
atgacccaccatggcttcgccgagctgaaccggcgccaagccgaggcggagcagaaaacc
ttcgccaacccccgcaacgccgccgccggcagcctgcggcaactggattcccgcattacc
gcccagcggccgctggagttctacgcttactccctggcgcaactggaaggggagaactgg
ccggatcgccactccgccatcctcgagcggttgcgccaatggggactgcgggtgaatccg
gaagtgaagctttgtgatggcgtggacgccttgctggcgttttaccaggacatcctggcg
cgtcgggatcagttggactacgacatcgacggcgtggtctacaaagtggaccggctcgac
tggcagcgtgacctgggcttcgttagtcgcgcgccgcgctgggccatcgcgcacaagttc
ccggcccaggaagagatcaccgttctcaacgaggtggattggcaggtgggccgcaccggg
gcgctgacgccggtggcgaagctggagccggtgcaggtgggcggggtcaccgtcagcaat
gccaccctgcacaatctggacgagatccgccgtcttggcattcgcattggcgacagcgtg
atcatttatcgcgccggcgatgtcatcccgaaggtggtgggcaaggtccaggagcgcagt
cctgcggaccctcaggttttcaagggcggagagtcggccgctatccgccaggtcgggccc
ttcgtcaggatccctcgtgagtgctggctgagcccgcgttacgcggatcaacgcgcccct
caggcgccgcgccattgcccggtctgcgacagccaggtgatccgcaagcgtggcgaggtc
gcttatcgttgcaccggtggcctgatctgcggcgcccagcagcgcgaggcgatcaagcat
ttcgcttcgcggcgcgccatggacatcgagggcctgagcataaaacgggtggacctgctg
gtggaccaggggctggttagtaacgtggccgacctctatcgcctcaaggccgaggacatc
gccgacctggaacggatgggcgagaagtccgccgccaacctgatcgaggcgctggcgcac
tccaggaccgtgagcctggagcgcttcctgttcgccctcggcatcctgcagatcggcgaa
gaaaccgctaaggcgctggcggattgtttcggtgacctggagacgatccggcgggcgcca
ttgctgttgttcctggcggtgccggatgtgggactggaagtggccaaggcgattcatgct
ttcttccgcgagcaacataacgaggacgtcatcgacggtctgctggccgaaggcgtccag
ccgcgcgccaatggccatccctccgcggccttcgtgcgggagctgactctggggtacttc
ctcaaggcggccaagcgcctcggcatggcgctggacggcgtcggggaaaagtccctggaa
accctgggcggtcactacaagaccgtggcggctctcgccgaggccgatgccgatgacgcg
ccggtacgcccggccatgctggagcaggttcacaaggcgctgggacaggacgattggcgg
cagcggctggaacaggccgaggcgctggcttccgagttgtccgaaaaggcgccgcgggaa
acggcggagcaggccctggaagggcagacctgggtgctgaccggcaccttgtcccggctg
acccgtgatcaggccaaggcgcatctgcaaagcctgggcgccaaggtggccggcagcgta
tcgaagaaaacccattgcgtggtggccggcgaggccgccggctccaagctctccgatgcg
gaaaagctggaggtggaagtgatggacgaagacaccttcgtcgactttctcgccggccac
ggcatcaccttgtga
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