Alloacidobacterium dinghuense: H7849_20160
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Entry
H7849_20160 CDS
T08177
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adin
Alloacidobacterium dinghuense
Pathway
adin03030
DNA replication
adin03410
Base excision repair
adin03420
Nucleotide excision repair
adin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7849_20160 (ligA)
03410 Base excision repair
H7849_20160 (ligA)
03420 Nucleotide excision repair
H7849_20160 (ligA)
03430 Mismatch repair
H7849_20160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adin03032
]
H7849_20160 (ligA)
03400 DNA repair and recombination proteins [BR:
adin03400
]
H7849_20160 (ligA)
Enzymes [BR:
adin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7849_20160 (ligA)
DNA replication proteins [BR:
adin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7849_20160 (ligA)
DNA repair and recombination proteins [BR:
adin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7849_20160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7849_20160 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7849_20160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7849_20160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
BRCT_2
HHH
RNA_pol_A_CTD
RdRP_1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QNI31371
UniProt:
A0A7G8BFQ1
LinkDB
All DBs
Position
complement(4841370..4843412)
Genome browser
AA seq
680 aa
AA seq
DB search
MTKSTAADRIEALRDEIRHHEHLYYVMDSPEISDAEYDVLVRELQALEKEHPELITPDSP
TQRVGGKPKEGFPKVAHSRPMLSLDNVTSEEELRDWDRRVRERVGEGVEISYVCEYKLDG
LSMALLYQEGPDGSAQLARGLTRGNGTIGEDVTTNVRTIRSVPLSVSAAKLRKAKLPPMF
EVRGEVVMPLKAFVKANEEREAQGLAPAANPRNYAAGTIRTLEPNIVAQRRLDFYAYFAL
TTTGETIFSEQSDALDALTAAGFRVNPHREAIHSFDKLMGFVDRAEKHRADLGYEIDGVV
IKVSSTDLQARLGYTGRAPRWAVAYKFTARAGTTQVEDIKVQVGRTGKLTPVAWLRPVVI
GGTTVSRATLHNADFIEELGLKIGDWVKVERGGDVIPKVVEVVEDTEHSRGHTTFHFPTH
CPECNSEIVRAEGEADYRCVNADCPARLRESLLHYSSRGVMNIEGLGEAVVNQLLDRKMV
RSIAELYKLDEEKLLSLERIGEKTARTLLKEIEQSKKAPLNRVLYGLGIRFIGERTAQLL
AEEFGSMNALMAASQEELERVNEVGPRVSQAIREFFDEETNRRLVEHLRDAGLTFTAEKR
KKSSELEGLTFVLTGTLPTLSREDAKAKIESAGGRVSGSVSKKTSYVVAGEEAGSKLDKA
QELKVPVIDEAKLLELLNGR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaagcaccgcagctgaccggattgaagcattgcgcgatgagatacggcatcat
gagcacctttactatgtgatggattctcctgagatttcagacgccgaatacgacgttctg
gtacgcgagctgcaggcgcttgagaaagagcatccggagctgatcacacccgattcgccg
acacagcgcgtaggcggcaaacccaaagaaggtttcccgaaggtcgcgcattcgcgtccg
atgctctcgctagacaacgtgaccagcgaagaggagctgcgcgattgggaccgccgcgtg
cgtgagcgcgtgggcgaaggtgtcgagatcagctatgtctgcgagtacaagctggatggc
ctttcgatggcgcttctctatcaggaggggccggatggttcagcgcagctggcgcgcggg
ctgacgcgcggcaatggaacgatcggcgaggatgtgaccacaaatgttcgcacgattcgt
tcggtcccgctttccgtttctgcggcaaagctgcgcaaggcgaagctgccgcctatgttc
gaagtgcgcggtgaggtggtcatgccgctgaaggcttttgtgaaagcgaatgaagaacgc
gaagcgcagggacttgccccggcggcaaacccgcgcaactatgccgcaggcacgattcgc
acgctcgagccgaatatcgttgcccaacgccggcttgatttctatgcctactttgcactg
acaacgacaggcgagaccatcttcagcgagcagagcgatgcactggacgcgttgactgcg
gccgggttccgcgtgaatccgcatcgcgaggcgattcacagcttcgacaagctgatgggc
tttgtggatcgcgcggagaaacaccgcgcggatctgggatacgaaattgacggcgtcgtc
atcaaagtcagctcaacggatctgcaggcacggctcgggtataccggtcgcgcgccgcgc
tgggccgtagcctataaattcacggcgcgtgctggaacgacacaggttgaggacatcaag
gtgcaggtgggccgcacaggcaagctgactccggtggcatggcttaggcctgtggtgatt
ggcggaacaacggtcagccgtgcgacgctgcataacgccgattttattgaggagttgggt
ctgaagatcggcgactgggtcaaggtcgagcgcggcggcgatgtgattccgaaagtggtg
gaagtcgtcgaggacacggaacattcgcgtgggcacacgacgtttcacttccccacgcat
tgccctgaatgcaacagcgaaatcgttcgcgcggaaggcgaggccgattatcgatgtgta
aatgccgattgcccggcgcgtctgcgggaaagcctgctgcattattcctctcgtggcgtg
atgaatatcgaagggctgggcgaggccgtggtaaaccagctgcttgatcgaaaaatggtg
cgcagcattgccgaactctacaagctcgacgaagagaagctgctgtccctggaacgcatt
ggtgaaaagacggcgcgaacgctgctcaaagaaatcgagcagtcgaagaaggctccgctc
aatcgcgtgctatacggcctggggattcgctttatcggcgagcgtacggcacagttgctt
gccgaggagttcggatcgatgaacgcgctgatggctgcttcgcaggaggagctggaacgc
gtgaacgaagtggggccgcgtgtttcgcaggcgattcgcgagttcttcgatgaagagacg
aaccggcggctcgtggaacatctgcgcgacgccgggctgacgttcacggctgagaagcga
aagaagtcttcagaactggaaggcctgacgtttgtgctgaccggcacgctgccgaccctg
tcccgcgaagacgctaaggcgaagattgaatccgcaggcggacgtgtgtctggttcagtg
agcaagaagacgagctacgttgttgcaggcgaagaagctggctcgaagctggataaagcg
caagagctgaaggtccccgtcattgacgaggcgaagctgctggagctgctcaatggcaga
tag
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integrated database retrieval system
