Alicycliphilus denitrificans BC: Alide_2252
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Entry
Alide_2252 CDS
T01397
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03030
DNA replication
adn03410
Base excision repair
adn03420
Nucleotide excision repair
adn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Alide_2252
03410 Base excision repair
Alide_2252
03420 Nucleotide excision repair
Alide_2252
03430 Mismatch repair
Alide_2252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adn03032
]
Alide_2252
03400 DNA repair and recombination proteins [BR:
adn03400
]
Alide_2252
Enzymes [BR:
adn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Alide_2252
DNA replication proteins [BR:
adn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Alide_2252
DNA repair and recombination proteins [BR:
adn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Alide_2252
NER (nucleotide excision repair)
GGR (global genome repair) factors
Alide_2252
MMR (mismatch excision repair)
DNA ligase
Alide_2252
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Alide_2252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADU99987
LinkDB
All DBs
Position
2304270..2306423
Genome browser
AA seq
717 aa
AA seq
DB search
MTEKSELFSAPAPAVPALVASKVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQAL
EGAYPALVTPDSPTQRVIGAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELK
LAPEDPPVEYVAEPKFDGLAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQ
LSAPTLGADASSLPPEGARFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDK
TFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGEVEGGPEFATHYALLQRLKAWGFPVA
AQVRIALGAPGLIAFHQQIGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHK
YPAQEMMTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTNATLHNLFELRRKRVRVGDQ
VIVRRAGDVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVREPGEVNHRCSGGLFCPA
QRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGHVIRTLPDLFRLDLPTLAGLDRMAEKSAQ
NVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDAGVDQLLQVNDVGP
VVAESIHTFFAQPHNREVVGQLRECGVAWEEGEPTAGATLPLAGKTIVLTGTLPTLSRDE
AKDMLEAAGAKVAGSVSKKTHYVVAGAEAGSKLEKAQALGIPVLDEDGLRALLRGEG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaaatccgagcttttttcggctccagcgcccgctgtgcctgcgctggtagct
agcaaagtagaagcactgcgcgcccaactcaaccagtgggcgcacgagtactacgtgctg
gacgagcccagcgtgcccgatgccgagtacgaccgcgtgttccagcagctgcaggcgctg
gagggcgcgtaccccgccctcgtcacgcccgactcgcccacgcagcgcgtgatcggcgcg
gtgatgaacggcctcgcgcccgtgcggcaccgcgtggccatgctctcgatccgcaccgag
accgacaccgaggccagcggcgccgaggcgttcgacgcgcgcatccgccgcgagctcaag
ctcgcccccgaggacccgcccgtcgaatacgtggccgagcccaagttcgacggcctggcg
atgagcctgcgctacgaacacggccgcctcgtgcaggccgccacgcgcggcgacggcgag
gtgggcgaggacgtgacgcacaacatccgcaccatccgccagatccccctcacgctgcag
ttgagcgcccccacgctcggcgctgacgcgtcctcactgccccccgagggggcgcgtttc
gccttggggcggcccggcggcgaaaccgcgccgcccgtgctggaggtgcgcggcgaggtc
tacatgcgccgcgcggacttcgagcagctcaacgagcgccagcgcgagaagggcgacaag
accttcgtgaacccgcgcaacgccgcggccggcgccgtgcgccagctcgattcgggcatc
gccgcgcagcgcccgctctcgttcttcgcctacggcctgggcgaggtggagggcgggccc
gagttcgccacgcactacgcgctgctgcagcgcctgaaggcatggggttttccggtcgcg
gcgcaggtgcggatcgcgctgggcgctcccggactcatcgcattccaccagcagatcggc
gcagagcgcgaccagctgccctacgacatcgacggcgtggtctacaaggtcaacagcctg
gcgctgcaaaggcagctcggcttcgtgacgcgcgagccgcgctgggccgtggcgcacaag
tacccggcgcaggagatgatgacgcgcgtggagggcatcgacgtgcaggtgggccgcacg
ggcaagctcacgcccgtggcgcgcctggcgcccgtgttcgtgggcggcgtcaccgtcacc
aacgccacgctgcacaacctgttcgagctgcgccgcaagcgcgtgcgcgtgggcgaccag
gtcatcgtgcgccgcgcgggcgacgtgattcccgaggtggtgggcgtggtgcccgcgccg
cgtgcatcctacgtgcccaacttccgcatgccgcgccagtgcccgatctgcgcaagcacc
gtggtgcgcgagccgggcgaggtcaaccaccgctgctcgggcggcctgttctgccccgcg
cagcgcaagcaggccgtgctgcacttcgcccagcgccgcgcgatggacatcgagggcctg
ggcgagaagctcgtggaccagctcgtcgacggccacgtgatccgcacgctgcccgacctg
ttccggctggacctgcccaccctggcgggtctggaccgcatggccgaaaagtccgcgcag
aacgtgctcgacgcgctacagaagtcgaagcagaccacgctgccgcgcttcctgttcggc
ttggggatacgccacgtgggcgaggccacggccaaggacctcgcgcggcacttcggcgcg
ctcgacgccatcatggacgcgggcgtcgatcagctgctgcaggtcaacgacgtgggcccc
gtggtggcggaaagcatccacacctttttcgcccagccgcacaaccgcgaggtggtcggg
cagctgcgcgaatgcggcgtcgcctgggaagagggcgagcccacggcgggcgccacgctg
ccgctggcgggcaagaccatcgtgctgaccggcacgctccccacgctgagccgcgacgag
gccaaggacatgctcgaagccgcaggcgccaaggtggcgggctcggtcagcaaaaagacc
cactacgtggtcgccggggccgaggcgggcagcaagctggagaaggcccaggcgctgggc
atccccgtgctcgacgaagacggcctgcgcgcgctgctgcggggcgagggctga
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