Tsuneonella dongtanensis: A6F68_01935
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Entry
A6F68_01935 CDS
T04466
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ado
Tsuneonella dongtanensis
Pathway
ado03030
DNA replication
ado03410
Base excision repair
ado03420
Nucleotide excision repair
ado03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ado00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6F68_01935 (ligA_2)
03410 Base excision repair
A6F68_01935 (ligA_2)
03420 Nucleotide excision repair
A6F68_01935 (ligA_2)
03430 Mismatch repair
A6F68_01935 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ado03032
]
A6F68_01935 (ligA_2)
03400 DNA repair and recombination proteins [BR:
ado03400
]
A6F68_01935 (ligA_2)
Enzymes [BR:
ado01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6F68_01935 (ligA_2)
DNA replication proteins [BR:
ado03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6F68_01935 (ligA_2)
DNA repair and recombination proteins [BR:
ado03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6F68_01935 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6F68_01935 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
A6F68_01935 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6F68_01935 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
zf-C2H2_FBX41
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ANY20443
UniProt:
A0A1B2AE66
LinkDB
All DBs
Position
1952374..1954434
Genome browser
AA seq
686 aa
AA seq
DB search
MSGITEADAANELMRLARAIARHDRLYHTEDSPEISDAAYDALVRRNAELEEQFPHLVRP
DSPSRKVGHEVAASPLSKVRHEVRMMSLDNAFSDEEVEEFVARVRRFLALADDAPLAFTA
EDKIDGLSCSLRYENSKLVRAATRGDGEVGEDVTANVAHVADVPQMLRGNVPDVFEVRGE
IYMAKQDFAALNAAQQTAGGKIFANPRNAAAGSLRQKDANVTAQRPLRFWAHGWGAASEV
PEASQFAMMKRLKDWGLPVSPDLLLCHSLEELLQHYRSIGARRGDLPYDIDGVVYKVDDL
ALQARLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLAPVLVGGVTVT
NVTLHNRDEIARLGVRPGDRVVVQRAGDVIPQVVENLTRDEDRPAFAFPDHCPVCGSEAV
AEEGEVDVRCTGGLICRAQQFERLRHFVSRAALDIEGLGEKSIAEFMELGWLAKGPGDIF
RLKSRRPDLVGREGWQDKSVDNLLAAIEAKRSPDAARLLFGLGIRHVGAVTARDLMKRFE
SLPALRAAAERAHAGDADAIAELTSIDGVGPVVVEALGDFFHEDHNQAVWDDLLGQVSPP
PYIVETTASAVSGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSPKTDLVVAGPGAGS
KLKKAAELGIEVIDEAAWAQIVAAAG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggatcaccgaagccgacgccgccaacgagctgatgcgcctcgccagggcaatc
gcgcggcacgaccggctttatcacaccgaggattcgcccgagatttcggatgcggcatac
gatgcgctcgtccggaggaatgcggaactcgaggagcagttcccccacctcgtccggccg
gattctccttcgcgcaaggtcgggcacgaagtcgccgcatcgccgctgtcgaaggtgcgg
cacgaagttcgcatgatgagcctcgacaacgcgttttccgatgaggaggtcgaggagttc
gtcgcccgcgtccggcgcttccttgcccttgccgacgacgcgccgcttgccttcacggcg
gaggacaagatcgacggcctgtcgtgctcgcttcgctacgagaacagcaagctggtgcgg
gccgcgacgcgcggtgatggcgaggtgggagaggatgtcaccgccaatgtcgcgcatgtt
gccgacgtgccgcaaatgctgcgcggaaacgtgcccgacgtcttcgaggtgcgcggcgag
atttacatggcgaaacaggactttgccgcgctcaatgctgcgcaacagacagcgggcgga
aagattttcgccaacccccgaaatgctgcggccggttcgctgcggcagaaggatgcgaac
gtcaccgcgcagcggcccttgcggttctgggcgcacggatggggcgctgccagcgaggtg
cccgaagccagccagttcgccatgatgaagcgcctgaaagattggggattgccggtcagc
cccgatctgctgctttgccattcgctcgaggaattgctgcagcattaccgcagcatcggc
gcgcgccgcggcgacctgccgtatgacatcgacggagtcgtctacaaggtcgacgacctg
gccctgcaggcgcggctcggcttcgtcgccaaggcgccgcgttgggcgctcgcacacaag
tttccggcggagcgcgcggagacgacactggaggcgatcgacatccaggtcggccggacc
ggcaagctgactccggtggggcggctcgccccggttctggtcggcggcgtgaccgtcacc
aacgtgacgctgcacaaccgcgacgagatcgcgcggctcggcgtacgtccgggcgaccgc
gtcgtcgtccagcgcgccggcgacgtgatcccgcaagtggtggagaacctgacgcgcgac
gaagatcgacccgcattcgcgtttcccgaccattgcccggtctgcggcagcgaggcggtc
gctgaagagggcgaagtcgacgttcgctgcaccggcggcctcatctgccgcgcgcagcag
ttcgaacgcctgcgccatttcgtgagccgcgccgccctcgatatcgaagggctgggagag
aaatcgatcgccgagttcatggagcttggctggctggcgaaggggccgggcgacatcttc
cgcctgaagagccgtcgcccggacctcgtcggacgtgagggctggcaggacaagtctgtg
gacaatctgttggcggcgatcgaggcgaagcgatcgcccgatgcggcgcggctgctgttc
ggtctggggatccgccacgtcggcgcggtcaccgcccgcgacctcatgaagcggttcgaa
tccctcccggcgctccgcgcggcagcggaacgggcgcacgccggcgatgcggatgcaatt
gccgagctgacctccatcgatggcgtagggccggtggtcgtcgaggccctcggcgacttc
ttccatgaggatcacaaccaggccgtctgggacgacctgctcggccaagtcagcccgccg
ccctacatcgtcgaaaccactgcgagtgcggtcagcggcaagaccgtggtgttcaccggc
aagctggagacgatgagccgcgacgaagccaaggcccaggccgagcggctcggtgccaaa
gcagcgggctcggtcagccccaagaccgacctcgtggttgccggccccggtgcgggcagc
aagctcaagaaggctgccgaactcggtatcgaggtgatcgacgaagcggcctgggctcag
atagtcgcggcggcgggctga
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