Actinobacillus delphinicola: NCTC12871_00719
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Entry
NCTC12871_00719 CDS
T06572
Symbol
ligA_1
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adp
Actinobacillus delphinicola
Pathway
adp03030
DNA replication
adp03410
Base excision repair
adp03420
Nucleotide excision repair
adp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12871_00719 (ligA_1)
03410 Base excision repair
NCTC12871_00719 (ligA_1)
03420 Nucleotide excision repair
NCTC12871_00719 (ligA_1)
03430 Mismatch repair
NCTC12871_00719 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adp03032
]
NCTC12871_00719 (ligA_1)
03400 DNA repair and recombination proteins [BR:
adp03400
]
NCTC12871_00719 (ligA_1)
Enzymes [BR:
adp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12871_00719 (ligA_1)
DNA replication proteins [BR:
adp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12871_00719 (ligA_1)
DNA repair and recombination proteins [BR:
adp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12871_00719 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12871_00719 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC12871_00719 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12871_00719 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
VEJ09274
UniProt:
A0A448TTB6
LinkDB
All DBs
Position
1:complement(767597..769612)
Genome browser
AA seq
671 aa
AA seq
DB search
MTQPSLQQQIEELRKTLRHHEYLYHVLDTPEIPDSEYDRLFHQLKALENSHPEFITADSP
TQRVGAKPLTSFSQIKHEIPMLSLDNVFNDDEFMAFVKRIQDRLPFSTENLTFCCEPKLD
GLAVSILYENGKLVRAATRGDGQTGEDITANVRTIRNIPLQLLTDNPPARLEVRGEIFMP
HQAFENLNEMALAKGEKTFANPRNAAAGSLRQLDPKVTRQRHLMLNAYGIGIAEGVLLPD
THYDRLQWLHSMGIPVNKEIELCGGIEQVLKFYRNIQEKRPHLGYDIDGTVLKVNDIALQ
EKLGFISKAPRWAIAYKFPAQEELTVLRDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT
LHNGDEIERLGLAIGDTVSIRRAGDVIPQVVGVVRERRPENAKPIIFPTHCPVCGSLVKR
IEGEAVARCTGGLFCDAQRKEALKHFVSRKAMNIDGVGAKLIEQLVDKEIIHTPADLFKL
DLNTLMRLDRMGEKSAQKALDSIEKAKSTTLARFLFALGIREVGESTALNLANYFKTLAP
IQEADIETLQKVQDIGDVVARRVYHFWREPHNVEVVNDLIAQGVHWEPVETKEIAENPFM
GKTVVLTGTLMQMTRNEAKEKLQAMGAKVSGSVSAKTDYVIAGESAGSKLTKAEELGINI
LSEDAFLGLLS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaccaagcttacaacagcaaattgaagaattaagaaaaacattacgccatcac
gaatatctttatcatgtccttgatacgccagaaattcccgatagcgaatatgatcgtctt
tttcatcaattaaaagcgttagaaaactcacatcctgaattcattactgccgatagccca
acgcaacgtgttggtgcgaaacctttaactagtttttcgcaaattaaacatgaaattcca
atgttatctttggataatgtcttcaatgatgatgaatttatggcatttgtaaaacgaatc
caagatcgtctgccattctcaacagaaaatcttaccttttgttgcgaacctaaattagat
ggcttagcggtaagtattttgtatgaaaatggaaaacttgtgcgtgctgcaacccgtggt
gatgggcaaacgggtgaagatattactgctaatgtccgtacgattcgtaatattccatta
caattattaaccgacaatccgcctgctcgtttggaagtgcgtggtgaaatttttatgcca
catcaagcctttgaaaatcttaacgaaatggcattagcgaaaggagaaaagacttttgct
aatccacgtaatgcagccgctggctcattacgccaactcgatccaaaagtgacgcgtcaa
cgtcatttaatgctcaatgcctacggaattggaattgcggaaggcgtattgttgccagat
acccattacgatcgtttgcaatggctacattcaatgggaattcctgtcaataaagaaatt
gaattatgtggtggcattgaacaggttttaaaattctaccgcaatattcaagaaaaacgc
ccacatttaggctatgacattgacggtacggttttaaaagtgaatgacattgcgttgcaa
gaaaaattgggctttatttcaaaagcaccacgctgggcgattgcgtacaaattccctgca
caagaagaattgaccgtattacgtgatgttgaattccaagtaggacgtacgggtgcaatt
acgccagtagcaaaattagaacctgtatttgtggggggcgtaacggtaagtaatgcgacc
ttacacaatggtgatgaaattgaacgtcttggtttagcgatcggtgataccgtaagtatt
cgtcgtgcgggtgatgttattccacaagttgtaggtgtcgttcgtgagcgtcgtccagaa
aacgcaaaaccgattattttcccaacgcattgccctgtttgtggttctttagtcaaaaga
attgaaggcgaagcggtggcacgttgtacgggtggtttattctgtgatgcacaacgtaaa
gaagcactaaaacatttcgtatcacgcaaagcgatgaatattgatggggtaggtgcaaaa
ctcattgagcaattagtggataaagaaattattcataccccagcagatttatttaaattg
gatttaaacaccttaatgcgccttgatcgcatgggtgaaaaatctgctcagaaagcatta
gacagtattgaaaaagcaaaatcaaccacacttgcacgtttcctttttgctttgggtatt
cgtgaagtgggggaaagtactgcgctgaatttagcaaattacttcaaaacattagcaccg
attcaagaagcggatattgaaacgttacaaaaagtgcaagatatcggcgatgtggtggca
cgtcgtgtttatcatttctggcgcgaaccgcataatgtagaagtggtgaatgatctgatt
gcccaaggcgtccattgggaaccagtggaaaccaaagaaattgctgaaaatccatttatg
ggtaaaactgtcgtgttaacaggaaccttaatgcaaatgacccgtaatgaagcgaaagaa
aaattacaggctatgggagctaaagtcagtggtagcgtttctgcgaaaacggactatgtg
attgctggcgaaagtgcaggttctaagctcaccaaagccgaagaattgggcatcaatatt
ctcagcgaggatgcttttttaggtttattaagctaa
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integrated database retrieval system
