Acinetobacter dispersus: FPL17_10335
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Entry
FPL17_10335 CDS
T06602
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ads
Acinetobacter dispersus
Pathway
ads03030
DNA replication
ads03410
Base excision repair
ads03420
Nucleotide excision repair
ads03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ads00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPL17_10335 (ligA)
03410 Base excision repair
FPL17_10335 (ligA)
03420 Nucleotide excision repair
FPL17_10335 (ligA)
03430 Mismatch repair
FPL17_10335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ads03032
]
FPL17_10335 (ligA)
03400 DNA repair and recombination proteins [BR:
ads03400
]
FPL17_10335 (ligA)
Enzymes [BR:
ads01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPL17_10335 (ligA)
DNA replication proteins [BR:
ads03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPL17_10335 (ligA)
DNA repair and recombination proteins [BR:
ads03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPL17_10335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPL17_10335 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPL17_10335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPL17_10335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
zf-C2H2_ZFAND2
Motif
Other DBs
NCBI-ProteinID:
QHH97927
LinkDB
All DBs
Position
complement(2229143..2231170)
Genome browser
AA seq
675 aa
AA seq
DB search
MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPDCIQADTP
TNKVGGQALSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMP
KQGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPNHGLE
TMHDSLHWLTRFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPADAEMVHLPTNCPVCESPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRDTLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADIEALKKTPDVGDITAEWIADFFQAPHNLEVLDRLMAAGIHWDAPTAPTRQPLN
GESWVVTGTLETMGRDEATQKLQALGARVSGSVSSKTKCLVAGEKAGSKLDKAQKLEIRV
LNEQEFLEFLKQYEV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaacataactcagtcattgagcaaatgcgtcagttgattcaactgattgcaaaacac
aatcatgcttactatgtgatggatcaaccttccatttcagatagtgaatatgaccattta
tttcatcaactgaaagcactcgaacaacaatatccagactgtattcaggcagatacccca
accaataaagtgggggggcaagccttatcgaaatttgaaagtgtcacccatgcagtaccg
atgctgtcattgggcaatgtctttaatcaggaagacctgtttgcttttgcccgccgtatt
gatgaacgtttaccgaatcaaaaagtccagtatgaagtagagctgaaactggatggttta
gcgatttcactgtggtatgaaaatggtgtcttggttcgtggcgtgacacgtggtgatggc
gagacaggtgaagacattactcagaatgttaaaaccattcggaatttgccgaaagtctta
tccagtcagcatcaagcaattccagagtttctggaagttcgtggtgaggtattgatgcca
aagcaaggctttgaaaagctcaatgccgatcaagaagccaaaggagataagacctttgcc
aatccacgtaacgccgcagcaggaagcctgcgtcagcttgacccgaatattgcagcttca
cgtccattggcgttctatgcttatggaattgcgcagtgtgtaccgaatcatggccttgaa
accatgcatgacagtttgcactggttaactagatttggttttgaaattgcagaacgtcaa
ttcttgtgtgcctcgattgaagaagtgcaacaacgttatgaacagatacaacaagaacgc
ccagacctcaaagttgaaattgacggcatggtgattaaggtggacagccttaaacagcaa
caacaattaggcttcctgagtcgtgaacctcgttgggcaacggcttataaattcccagcg
caggcagcactgaccaaagttgaaaatattgactggcaagtggggcgtactggaacactg
acccctgtcgcacgtttagcacccgtctttgttggtggggtaacggtgtctaatgtaact
ttgcataacattggtgaaattcatcgtttagatgtgcgtgttggtgataccgttagtgtc
tatcgtaccggggacgtgattccaaaagttgagaaggtttgggctgagtttcgacctgcc
gatgcggagatggttcatctcccgaccaattgcccagtctgtgaatcacctgtggtgatg
ccagaaggtgaggccttggcacgttgttcaggtggcctgtattgtgcagcacaacggatt
gaagccattcgtcactttgtttcacgtaaagcactggatattgagggcttgggcgatcgt
tgggtcgagtcactgttacacctcgatctactcaaagatgtggctgatatttatcatttg
catgagcatcgcgacaccttattgaccatcgaaaaaatgggtgagaaatccgttcagaac
ttgattgatgcgattgaagcgagcaagaaaaccactttggcgcgttttatctatgcatta
ggtattcgtggtgttggtgaaactacagcgcgtatgctggccaataccttccagacgctt
gaggcactgaaagctgcggatattgaagcactgaagaaaacccctgatgtcggtgatatt
accgcagaatggattgctgactttttccaagcaccgcataaccttgaagtgttagatcgt
ttaatggcagcaggcattcattgggatgcaccaaccgcaccaacgcgtcagcctttgaat
ggtgagagttgggtggtcacaggtacattggaaaccatgggccgtgatgaagcgacacaa
aagcttcaagccttgggtgcgcgtgtcagtggtagtgtgtccagtaaaaccaaatgtttg
gttgcaggcgagaaagcaggtagtaagttggataaagcacaaaaacttgaaattcgagtc
ttgaatgagcaagagttcttagaatttttgaagcagtatgaagtctga
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integrated database retrieval system
