Achromobacter denitrificans: APT56_06540
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Entry
APT56_06540 CDS
T04244
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03030
DNA replication
adt03410
Base excision repair
adt03420
Nucleotide excision repair
adt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APT56_06540 (ligA)
03410 Base excision repair
APT56_06540 (ligA)
03420 Nucleotide excision repair
APT56_06540 (ligA)
03430 Mismatch repair
APT56_06540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adt03032
]
APT56_06540 (ligA)
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_06540 (ligA)
Enzymes [BR:
adt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APT56_06540 (ligA)
DNA replication proteins [BR:
adt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APT56_06540 (ligA)
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APT56_06540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APT56_06540 (ligA)
MMR (mismatch excision repair)
DNA ligase
APT56_06540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APT56_06540 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ALX82851
LinkDB
All DBs
Position
1468992..1471091
Genome browser
AA seq
699 aa
AA seq
DB search
MSKAGGTPAAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTP
ESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQAE
YFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
RGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAF
YAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVG
AVLEKRPADAREFVMPKACPVCGSAIERLEDETIARCTGGLFCAAQRKQTLWHAASRKAL
DIEGLGEKLVEQLVDSGRVKTLADLFSLRPLELVGLDRMGQKSADNLVDAIDKARAPALG
RLLFALGIRHVGETTARDVARHFGTIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHN
RDVIDQLKAQGVQPVAEAVPEDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVS
KKTAYLVAGEDAGSKLTKAQELGVTVLDEDGLKELLGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggccggagggacccccgcggcggaaaccgcggcgcgcctgcgggcggaaatc
gagcagcacaacgtccgctactacgtctacgacgacccgtcgatctcggatgccgagtac
gaccggctgatgcgtgagttgcaggatctggaagccgcgcatccggaactggtcacgccc
gaatcccccacgcagcgggtcggcgcggcgccggtttcggccttcggcagcgtgcgccat
gcggtgccgatgctgtcgctgggcaacgccttcgacgaagaggacgtggcggcattcgac
cgccgcgttaccgacacgctgcgcggcgccggcctgctgggcccggcgcagcaggcggaa
tatttctgtgaactgaagctcgacggcctggcgatcagcctgcgctacgaggacggccgg
ctggtccaggctgccacgcgcggcgacggccagaccggcgaggacgtcacgtccaacatc
cgcacgatcaaggcgatcccgctgcaactgagcggcccggcgcccaaggtgctggaggtg
cgcggcgaagtgctgatgaaccgcgccgatttcgagaagctcaacgcggcgcaggccaag
cgcgacgaaaaagtcttcgtcaacccgcgcaacgccgccgccggcagcctgcgccagctc
gacccgcgcatcaccgccaagcggccgctgcgctttttcgcctatggctggggcgaggtg
cgcggcctgccgggcacgcagagcggcctgttcgacgaagcgtcggccggcgcagcggat
gcctcgaccctgcccgagaaatcgcatggcgccatgctcgactggctggcatcgctgggc
ctgccggtcaacgtgaagcacaaccaccgcgccaccggcgccgaggggctgatggccttc
tacgccaaggtgggcgccctgcggcccgaactgccctacgacatcgacggcgtggtctac
aaggtggattcgttgccggcgcagaagttgctggggttcgttgcgcgcgcgccgcgcttc
gcgctggcgcacaaattcccggccgaagaggccaccaccacgctgctggacatcgaggtg
caggtcggccgtaccggcgccatcaccccggtcgcccggctcaagccggtgttcgtgggc
ggcgtgaccgtcaccaacgccacgctgcacaatgaagacgagatccgccgcaaggacgtg
cgcatcggtgacaccgttatcgtgcgtcgcgccggcgacgtgatcccggaggtggtgggc
gcggtgctcgaaaagcgtcccgccgacgcgcgcgagttcgtcatgcccaaggcctgcccg
gtctgtggctcggcgatcgagcgcctggaggatgaaaccatcgcccgctgcaccggcggc
ctgttctgcgccgcgcagcgcaagcagacgctgtggcacgccgccagccgcaaggccctg
gatatcgagggcctgggcgagaaactggtggagcaactggtggacagcggccgcgtcaaa
acgctggccgatctgttcagcctgcgcccgctcgagctggtcgggctggaccgcatgggc
cagaagtcggccgacaacctggtcgacgccatcgacaaggcccgcgcgccggcattgggg
cgcctgctgttcgcgctgggtatccgccacgtgggcgagaccacggcgcgcgatgtcgcg
cggcactttggcaccatcgaggccatcatggacgccgatgaggacgctttgtcctcggtg
cccgacgtggggccggtggtggcgggatcgatccgccgcttcttcgccgagcagcacaac
cgcgatgtgatcgatcagctcaaggcgcagggcgtgcagccggtggccgaggcggtgccc
gaggacaccacgctggcgggcaagacgttcgtgttgaccggcacgttgcccaactggacg
cgcgaggaagcctccatgcgcatccaggccgcgggcggcaaggtcagtgggtcggtgtcc
aagaagaccgcctatctggtggcgggcgaagacgccggcagcaagctcaccaaggcccag
gaactgggtgtcacggtactggacgaggacgggctcaaggaactgctgggttcgtcctga
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