Achromobacter deleyi: HLG70_15495
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Entry
HLG70_15495 CDS
T07788
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ady
Achromobacter deleyi
Pathway
ady03030
DNA replication
ady03410
Base excision repair
ady03420
Nucleotide excision repair
ady03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ady00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLG70_15495 (ligA)
03410 Base excision repair
HLG70_15495 (ligA)
03420 Nucleotide excision repair
HLG70_15495 (ligA)
03430 Mismatch repair
HLG70_15495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ady03032
]
HLG70_15495 (ligA)
03400 DNA repair and recombination proteins [BR:
ady03400
]
HLG70_15495 (ligA)
Enzymes [BR:
ady01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HLG70_15495 (ligA)
DNA replication proteins [BR:
ady03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HLG70_15495 (ligA)
DNA repair and recombination proteins [BR:
ady03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HLG70_15495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLG70_15495 (ligA)
MMR (mismatch excision repair)
DNA ligase
HLG70_15495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HLG70_15495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QVQ24314
LinkDB
All DBs
Position
complement(3447730..3449832)
Genome browser
AA seq
700 aa
AA seq
DB search
MSSASGGDNAAQAAARLRAEIEQHNVRYYVYDEPSVSDAEYDGLMRELQALEAEHPELVT
PESPTQRVGAAPVSAFGSVRHVVPMLSLNNAFDEEEVAAFDRRVTDTLRGAGLLGPAQQP
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLE
VRGEVLMNRADFEKLNQAQARRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VHGLPGAQSGLFDEASAGAAQASQLPEKSHGAMLEWLATLGLPVNVMHNHRATGAEGLMA
FYARVGATRAGLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEASTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVL
GPVLEKRPDDAREFVMPTACPVCGSAIERLEDETIARCTGGLFCGAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIEKARAPGL
GRLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKSQGVNPVAEAVPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSV
SKKTAYLVAGEDSGSKLVKAQELGVTVLDEDGLKALLGAS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcgtctggtggcgacaacgcggcgcaagccgcggcgcgcttgcgcgccgag
atcgagcagcacaacgtccgctattacgtctacgacgaaccctccgtctcggatgccgag
tacgacggcctgatgcgggagctgcaggccctggaggccgagcaccccgaactggtgacg
ccggagtcgccgacccagcgcgtgggcgcggcgcccgtatccgcctttggcagcgtgcgc
catgtggtgcccatgctgtcgttgaacaacgcgttcgacgaggaagaggtcgcggcgttc
gatcgccgcgtgaccgacacgctgcgcggcgcgggcctgttggggccggcgcagcaacct
gactatttctgtgaactgaagctcgacgggctggcgatcagcctgcgctacgaggacggc
cgcctggtgcaggccgccacccgcggcgacgggcagacgggcgaggacgtcacgtccaac
atccgcaccatcaaggcgatcccgctgcagttgaagggcgccgccccgaaagtgctggag
gtgcgcggcgaagtgctgatgaaccgcgccgactttgaaaagctgaaccaggcccaggcc
aggcgcgacgaaaaagtattcgtcaacccgcgcaacgcggccgccggcagcctgcgccag
ctggatccgcgcatcacggccaagcggcccctgcgtttcttcgcctacggctggggcgag
gtccacggattgccgggcgcccagagcgggctgttcgacgaagcctcggcgggcgcggcg
caagcctcgcagctgcccgagaagtcgcatggcgccatgctggaatggctggctacgctg
ggtctgccggtcaatgtgatgcacaaccaccgggccacgggcgccgagggcctgatggct
ttctacgccagggtgggcgcgacgcgcgccggcttgccctatgacatcgacggcgtggtc
tacaaggtggattcgctgccggcccagaaggtcctgggcttcgtggcgcgggcgccgcgc
ttcgcactggcgcacaagttcgccgcggaagaggctagcaccaccctgctggacatcgag
gtgcaggtgggccgcaccggcgccatcacgcccgtcgcccggctgaagcccgtgttcgtg
ggcggcgtcaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggac
gtgcgcatcggcgacacggtcatcgtgcgccgcgccggcgacgtgattcccgaggtgctg
ggtcccgtgctggaaaagcggccggacgacgccagggaattcgtcatgccgacggcctgc
ccggtctgcggctcggccatcgaacgcctggaagacgaaaccatcgcgcgctgcacgggc
ggcctgttctgcggcgcgcagcgcaagcagacactgtggcatgccgccagccgcaaggcc
ctggacatcgaaggcctgggcgaaaagctggtggaccagctggtcgacagcgggcgggtc
aagacgctggccgacctctacagcctgcgtcccctggagctcgtgggtctggaccgcatg
ggccagaaatccgccgacaatctggtcgccgccatcgaaaaggcgcgggcgcccgggctg
ggccgtctgctgttcgcgctgggcatacgccacgtgggcgaaaccacggcgcgcgatgtg
gcgcgtcatttcggcagcatcgacgccatcatggacgccgacgaggatgccttgtcctcg
gtgcccgatgtggggccggtggtggcggcgtcgatccgccgcttctttgccgagcagcac
aatcgcgatgtgatcgagcagctgaagtcgcagggcgtgaacccggtggccgaagcggtg
ccccagggcaccacgcttgcgggcaaaaccttcgtgctgacgggcacgctgcccaactgg
acgcgcgaagaggcctccatgcatatccaggccgccggcggcaaggtcagcggctcggtg
tccaagaagacagcctatctggtggcgggcgaggactcgggcagcaaacttgtgaaggcc
caggaactgggcgtgacggtgctggacgaagacgggctgaaggcactgctgggcgcgtcc
tag
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integrated database retrieval system
