Arsenophonus endosymbiont of Aphis craccivora: E3U36_02910
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Entry
E3U36_02910 CDS
T07584
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aed
Arsenophonus endosymbiont of Aphis craccivora
Pathway
aed03030
DNA replication
aed03410
Base excision repair
aed03420
Nucleotide excision repair
aed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3U36_02910 (ligA)
03410 Base excision repair
E3U36_02910 (ligA)
03420 Nucleotide excision repair
E3U36_02910 (ligA)
03430 Mismatch repair
E3U36_02910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aed03032
]
E3U36_02910 (ligA)
03400 DNA repair and recombination proteins [BR:
aed03400
]
E3U36_02910 (ligA)
Enzymes [BR:
aed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3U36_02910 (ligA)
DNA replication proteins [BR:
aed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3U36_02910 (ligA)
DNA repair and recombination proteins [BR:
aed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3U36_02910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3U36_02910 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3U36_02910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3U36_02910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
DUF5492
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
QLK87374
LinkDB
All DBs
Position
complement(542884..544896)
Genome browser
AA seq
670 aa
AA seq
DB search
MKEQQNYLVRLKQQLRHHEYLYHVLDTPEIPDAEYDRMMQELKKLEAEHSEWITADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRAHDRLKNNSQLTFCCELKLDGLA
VSLLYEHGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPAHIEIRGEVFMTHRG
FEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQLPASQY
QCLMQFKKWDLPVSDKVALCQNSQQVLAYYHQIEQERLGLGFDIDGVVVKVDPLSLQEAL
GFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHN
ADEIERLGIRIGDTVVIRRAGDVIPQIVNVLTERRSTDSREIRFPIHCPVCGSAIERIEG
EAVIRCTGGLICAAQRKGALKHFVSRRAMDIEGMGDKIIDQLVDKEYVKTAADLYRLNPD
ILARLERMGPKSAQNLINALEKSKQTTLARFIYALGIREVGEATAGNLATHYATLTSLMS
ADIESLKTVPNVGEVVAKHIINFFHEQHNRDVVNKLVNEIGISWPAIPVKKTNSSFTGKT
LVLTGTLNRLTRDELKDKLILLCAKVTASVSKKTDLVIAGEAAGSKLAKANELGIKIINE
DELMELLQEH
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacaacaaaattatctcgttcggcttaaacagcaattacggcatcatgaatat
ctttatcatgtattagatacgcctgaaatacccgatgcagaatatgatcggatgatgcag
gaattgaaaaaattggaggctgagcattcagaatggattactgctgattcgccaacacaa
cgggttggtgctgcgccattaacggcttttgagcaggtacgccatgaaataccgatgctg
tcattagataacgtttttgatgaagagagttatttagcctttgataaacgagcacatgat
cgtttaaaaaataatagccagttgacattttgttgtgaacttaaattagatggtttggcg
gttagcctgttatatgaacatggcgaactggtgcaggctgcgacgcgtggtgatggtaca
acaggcgaaaatattacggctaatattcgtaccattcgagcaattccgctccgtttgacc
ggcgataatattcctgcgcatattgaaattcgtggtgaagtttttatgactcatcgcggt
tttgaaaaactgaatgaggaagctcggcgtaatgatggtaaaatttttgccaatccacgt
aatgccgcagcaggctcattacgtcagcttgatcctcgtattactgccaaaaggccatta
gcctttttttgttatggtttcggcttgttagcgggcggacaattgccggctagccaatat
caatgtctaatgcagtttaaaaaatgggacttacctgttagtgataaggtagcgctttgc
caaaatagccaacaagttttagcctattaccatcaaattgagcaagagcgtttaggctta
ggttttgatatcgatggtgtcgttgttaaagtggatccgttgtcgctgcaagaagcgctt
ggttttgttgctcgagctcctcgttgggcaacggcatttaaatttcccgctcaagaacag
ataactttattgcatgatgttgaatttcaagtaggacgtaccggtgctattacaccggtt
gcccgattagagcctgttcaggttgcaggggtcacggtaagcaatgcaacattgcacaat
gctgatgagatagaacgtttaggtatacgcattggggataccgtcgttattcgcagagct
ggtgatgtgataccgcagattgttaatgtgctcactgaaagacgttctactgatagcaga
gaaattcggtttcctattcactgcccggtttgtggttcagccattgaacgtatcgaaggt
gaggctgtgatccgttgtactggtggtttaatttgtgccgcacaacgtaagggggccttg
aagcactttgtttcgcgccgagcaatggatattgagggcatgggtgataagattattgat
caattggttgataaagagtatgtaaagacagcggccgatctttaccgtttaaatcctgat
attttagccagattagagcgtatggggccaaaatctgcgcaaaatctaattaatgcgctt
gagaaatccaaacaaaccacattagctcgctttatttatgcgttgggtattcgggaagtt
ggcgaagcaacggctggcaatttggcgacacattatgcgacgttaacttcactcatgtca
gcagatatagagtcgctaaaaaccgtacccaatgttggcgaggtagtagcaaagcatatt
attaatttttttcacgaacaacataatcgcgatgttgttaataagttagtgaatgaaatt
ggtattagctggccagctataccagttaagaaaaccaatagttcatttaccggtaaaaca
ctagttttaaccggtacattaaaccgtttaacgcgtgatgagcttaaagacaagttaata
ttactttgcgcaaaagtcactgccagtgtttctaaaaaaaccgatctggtgatcgcaggt
gaagctgctggttctaaattggcaaaagcaaatgagttaggaataaaaattattaatgag
gatgaattaatggagttactacaagaacattaa
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