Arcobacter ellisii: AELL_1596
Help
Entry
AELL_1596 CDS
T06558
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aell
Arcobacter ellisii
Pathway
aell03030
DNA replication
aell03410
Base excision repair
aell03420
Nucleotide excision repair
aell03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aell00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AELL_1596 (ligA)
03410 Base excision repair
AELL_1596 (ligA)
03420 Nucleotide excision repair
AELL_1596 (ligA)
03430 Mismatch repair
AELL_1596 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aell03032
]
AELL_1596 (ligA)
03400 DNA repair and recombination proteins [BR:
aell03400
]
AELL_1596 (ligA)
Enzymes [BR:
aell01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AELL_1596 (ligA)
DNA replication proteins [BR:
aell03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AELL_1596 (ligA)
DNA repair and recombination proteins [BR:
aell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AELL_1596 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AELL_1596 (ligA)
MMR (mismatch excision repair)
DNA ligase
AELL_1596 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AELL_1596 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
HHH
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AXX95254
UniProt:
A0A347U8S6
LinkDB
All DBs
Position
1539892..1541841
Genome browser
AA seq
649 aa
AA seq
DB search
MTKSEYDLSIEKLISWAQAYYVFDNPIATDEEYDKLSRACLAFEQENPQLSHPNSPNKRV
GGFVLDGFEKASHLSRMWSQEDVFNTEELEDWIKRASKVNTNLEFFCQPKFDGASLNIIY
ENGILKQAITRGDGTVGEDVTNNVKTIYSIPLQIEEKSLIEIRGEIVIKKADFEKINEER
IKNNEQVFANPRNAAAGSLRQLDPNITAKRKLFFNVWGVGLNSLGFTKYSEMMDYIYSLG
FVKPPMQTLTSSVEGIEKLYHEIIKVRDEIEMMLDGMVVKINDIETQDELGYTVKFPRWS
CAYKFPALEKTTKIKDIILQVGRTGVITPVAVVEPTDIEGVIVERASLHNFDEIERKDIK
INDEVIIIRSGDVIPKITKVFTERRDGTQIDIPRPTSCPDCSSELLDEGALIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGNKIVEQLVREKKIYDILDIYSLKYEDLQDLEGFKEKKI
NNLLNAIENTKGSELHRIINALGIEHIGEVASKQICLEFGLDVINLTFEQLIALDGIGEQ
MANSFTEFMRVNKELVEKLISIINPKVEEKIEVEENPFKGKTVVITGTMSISRGEIKKTL
ESLGAKVASSVSKKTDYVIFGEDAGSKYDKAIELNVPTLTEEEMNRLIS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaagtgaatatgatttaagtatagaaaaattaatctcttgggcacaagcctat
tatgtatttgataatccaatagcaactgatgaagagtatgataaactctctcgtgcttgt
ttagcttttgaacaagaaaatccacaactttcacacccaaactcaccaaataaaagagtt
ggtggatttgtacttgatggatttgaaaaagcatctcacctatctcgtatgtggtcacaa
gaagatgtttttaatacagaggaacttgaagattggataaaaagagcttctaaagtaaat
acaaacttagagtttttttgccaaccgaaatttgatggagcatctttaaatataatttat
gaaaatggaatattaaaacaagcaatcacaagaggtgatggaactgttggtgaagatgta
acaaataatgtaaaaactatttactctattcctcttcaaatagaagaaaaatctttaata
gaaattcgtggtgaaatagtaatcaaaaaagccgattttgaaaaaataaatgaagagaga
atcaaaaacaacgaacaagtttttgcaaatccaagaaatgcagcagcaggaagtctgcga
caacttgacccaaatataactgcaaaaagaaaactattttttaatgtttggggtgttggt
ttaaactcacttggttttacaaaatactctgaaatgatggattatatctactctttagga
tttgtaaaaccacctatgcaaactttaacttcaagtgttgaaggaattgagaagctttac
catgaaataataaaggttcgagatgaaatagaaatgatgcttgatggaatggttgtaaaa
atcaatgatatagaaactcaagatgagcttggttacactgtaaaatttccacgatggtca
tgtgcttacaaatttccagccttagaaaaaacaacaaaaatcaaagatattattttacaa
gtaggaagaacaggagttatcactcctgttgcagttgttgaaccaacagatattgaaggt
gttatagtagaacgtgcaagtttacataactttgatgaaatagaaagaaaagatataaaa
atcaatgatgaagtaataattatacgaagtggtgatgtaattccaaaaattacaaaggtt
tttacagaacgccgagatggaactcaaattgatattcctcgccctacttcttgtcctgat
tgttctagtgaacttttagatgaaggagcacttataaaatgccaaaatcttgattgtcct
tcaagagttgtaaattctattatctattttgctagtaagaattgtatgaatattgatggt
ttaggaaataaaattgttgaacaactcgtacgtgagaaaaaaatctatgatattttagat
atttactcattaaaatatgaagatttacaagatttagagggttttaaagagaaaaaaata
aacaatcttttaaatgcaatagaaaatacaaaaggaagtgaacttcacagaatcatcaat
gctttaggaattgaacatattggggaagttgcttcaaaacaaatttgcttagagtttggc
ttagatgttataaatttaacttttgaacaacttatagccttagatggaattggtgagcaa
atggcaaattcatttactgaatttatgagagtaaataaagagttagttgaaaaattaatc
tctataattaatccaaaagttgaagaaaaaattgaagttgaagaaaatccttttaaagga
aaaactgttgtaataactggaacgatgagtataagccgaggtgagattaaaaaaacactt
gaatctttaggagcaaaagtagcttctagtgtctctaaaaagacagattatgtgattttt
ggagaagatgctggaagtaaatacgacaaagcaattgaattaaatgttccaacattaaca
gaagaagagatgaacagactaatttcttaa
DBGET
integrated database retrieval system
