Aeromonas salmonicida O23A: O23A_p0377
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Entry
O23A_p0377 CDS
T04990
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo03030
DNA replication
aeo03410
Base excision repair
aeo03420
Nucleotide excision repair
aeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O23A_p0377
03410 Base excision repair
O23A_p0377
03420 Nucleotide excision repair
O23A_p0377
03430 Mismatch repair
O23A_p0377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aeo03032
]
O23A_p0377
03400 DNA repair and recombination proteins [BR:
aeo03400
]
O23A_p0377
Enzymes [BR:
aeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O23A_p0377
DNA replication proteins [BR:
aeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O23A_p0377
DNA repair and recombination proteins [BR:
aeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O23A_p0377
NER (nucleotide excision repair)
GGR (global genome repair) factors
O23A_p0377
MMR (mismatch excision repair)
DNA ligase
O23A_p0377
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O23A_p0377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ARW81129
LinkDB
All DBs
Position
398279..400285
Genome browser
AA seq
668 aa
AA seq
DB search
MSETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTPASPSV
RVGGQPLTAFRQVRHEIPMLSLDNVFSSEELQAFEQRMKDRLKREVSFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLSLRGSDWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLGDSHFG
RLCQLKAWGLPMSPEVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEGQRPADAREILFPTQCPVCGSALERLEGE
VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
TVEQLLAVADVGEVVAKHVYYFLRQPHNVEVLEALLAAGIHWPVIEKKEASEQPFAGKTF
VLTGTLNLLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEE
QLQAALQS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccctctcccgccaccgtcaactgtgtgatctgctgaccgaatacggtcat
cagtactatgtgctggataaccccaccgtccctgacgccgaatacgatcgcctgatgcgg
gaattgatcgcgatcgagagcgagcacccagaactgaaaaccccagcctccccgagtgtt
cgggttggtggtcaacccttgactgccttcaggcaggtacgtcacgagatccccatgcta
agcctggacaacgtcttcagcagcgaagagttgcaggcgttcgagcagcgcatgaaggat
cgcctgaagcgggaggtgagctttaccttctgctgtgagcccaagctggatggtctggcg
gtgagcctgctctatgtggatggccagctggtgcaggccgctacccggggcgatggtgcg
accggtgaggagatcaccgagaacgtgcgcaccatcaaggcgatcccgctctccctgcgc
ggcagcgactggcccgcccggctggaagtccgtggcgaggtgtttatgcccaaggccggt
ttcgaggcgatgaatgccaaagcactggccgctggcgagaaggtgttcgtcaacccgcgc
aatgccgcggctggcagcctgcgtcagctcgattcccgcattaccgccagtcgcccgctg
aacttctacgcctatggcgtcggggtgggcggcgatcagctgggggattcccatttcggc
cgcttgtgtcagctcaaagcctggggcctgcccatgagcccggaggtgaaactcaaggaa
ggcgcggccggatgccaggcctttcacgacgatattctggcccgccgcggcgagctggcc
tacgagatagacggcgtggtttacaaggttgacgccatccccctgcaagaagagctgggc
tttgtggcccgcgctccccgttgggccactgcccacaagtttccggcccaggaggagatg
acactgctcgagaatgtcgagtttcaggtgggtcgtaccggtgccgtgactccggttgcc
aagcttaaacccgtgttcgttggtggcgtcaccgtctccaacgccactttgcacaatgcc
gacgagattgaacgccttggtgtcatgatcggcgataccgtgatcgtgcgccgggcaggg
gatgtgatcccgcaaatcgttgccgtggtggagggccagcgccccgcggatgcccgcgag
atcctctttcctacccaatgtccggtttgtggctcggcgctggagcggctggaaggggaa
gtggtcacccgctgctcaggcggtctgttctgcgaggcgcagcgcaaggaggcgatcaag
cactttgccgcacgccgtgccatggatgtggatggccttggcgacaaaattgtcgagcaa
ctggtagacaaggggctggtgaagacaccggcagacctgttcagcctcaacgccatccag
ctcgccggcctcgagcggatggggcagaaatccgcgctcaatctggtggcggccatcgat
gcggcgcgcagcactaccctgccgcgtttcctgtttgccctgggtattcgcgaggtgggg
gaggcgacagcgctgaacctggccaaccatttcctcaccctggatgccctgcgtgccgcc
acagtggagcagttgctggcggtggcggatgtgggggaggtggtggccaagcacgtctat
tacttcctgcgtcaaccccataacgtcgaggtactggaagccttgctggccgccggtatc
cactggcctgtcatcgagaagaaggaagcaagcgagcagccctttgccggcaagaccttt
gtgctgactggcaccctcaatttgctctctcgcaacgatgccaaggcggcgctgcaggcg
ctgggggccaaggtagccgggtctgtgtcggccaagacggatgtgctggtggcgggggaa
gcggccggttccaagctggccaaggcccaggagctcggcatcaccatctggaccgaagag
cagttacaggcagcccttcagtcatga
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