Aequorivita marisscotiae: QCQ61_15455
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Entry
QCQ61_15455 CDS
T10155
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aequ Aequorivita marisscotiae
Pathway
aequ03030
DNA replication
aequ03410
Base excision repair
aequ03420
Nucleotide excision repair
aequ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aequ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QCQ61_15455 (ligA)
03410 Base excision repair
QCQ61_15455 (ligA)
03420 Nucleotide excision repair
QCQ61_15455 (ligA)
03430 Mismatch repair
QCQ61_15455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aequ03032
]
QCQ61_15455 (ligA)
03400 DNA repair and recombination proteins [BR:
aequ03400
]
QCQ61_15455 (ligA)
Enzymes [BR:
aequ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QCQ61_15455 (ligA)
DNA replication proteins [BR:
aequ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QCQ61_15455 (ligA)
DNA repair and recombination proteins [BR:
aequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QCQ61_15455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QCQ61_15455 (ligA)
MMR (mismatch excision repair)
DNA ligase
QCQ61_15455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QCQ61_15455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
Zn_Ribbon_TF
TMF_DNA_bd
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WGF92589
UniProt:
A0ABY8KVN8
LinkDB
All DBs
Position
complement(3443807..3445804)
Genome browser
AA seq
665 aa
AA seq
DB search
MNIEQQITTLRNQLREHNYNYYVLDNPTISNFEFDQKLKQLQDLEKAHPEFYDANSPTLR
VGGAVTKNFETVPHTYRMYSLDNSYSKEDLEDWEKRIEKTVDGRVEFTCELKYDGASISL
TYENGKLLKAVTRGDGFQGDDVTANVKTIRSIPLQLKGDYPPLFDIRGEIVLPFEGFAKM
NAERVALGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSITGERLSIKTQFESLEKA
RQWGFKVPEAAKLAKNLDEVLDFVNYWDIHRHQLPYETDGVVVKVNNLQQQEELGYTAKS
PRWAMAYKFKAERVSTVLNQITYQIGRTGAITPVANLEPVELAGTIVKRASLHNADQIEK
LDIREGDTVFVEKGGEIIPKIIGVDFTQRDPNTNPTNYINQCPECSTPLVRNEGEAQHYC
PNAAGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVNNGLINNYADLYLLKAEQIIPLE
RMAQKSAENIVTGIEASKHIPFERVLFGLGIRYVGETVAKKLAKHYKTIDALRNASEEEL
TTIDEIGERIAQSVVSFFASEENIAIIERLKSYGVQLEISAEKLANQTEVLKGSTFVVSG
VFTKVSRNELKKLIEDNGGKVSSSISSKTNYVVAGDNMGPSKKTKAESLDISIISEDEFL
QMIAN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcgaacagcaaataaccacgcttcgcaaccaacttcgcgaacataattataat
tattacgttttagataatcccaccatttcgaacttcgaatttgatcaaaaactaaaacaa
cttcaagatttagaaaaggcgcatcccgaattttatgatgccaattcgccaacacttcgg
gttgggggagcggtaacaaaaaactttgaaactgtgccccacacctacagaatgtattct
ttagataattcgtattcaaaagaagatttggaagactgggaaaaacgcattgaaaaaact
gttgatggcagggtagaatttacctgcgaactaaagtacgatggggcttccattagttta
acatacgaaaacggaaaattgttaaaagccgttacgcgcggcgatggttttcagggcgat
gatgttactgcaaacgtaaaaaccatacgctccataccgctacagttaaagggcgattac
ccaccattgtttgatattcgcggcgaaattgtgttgccctttgaagggtttgcaaaaatg
aatgctgaaagagtagcattaggcgaagaaccctaccgaaacccgcgaaatacggcctcg
ggcagtttaaaattgcaggatagcgccgaagttgcaaaacgcccattagattgtctttta
tatagtattacgggcgaaaggctctcaattaaaacacaatttgaaagtttggaaaaagca
cgccaatggggctttaaagtccccgaagctgccaagctggccaaaaacttggatgaggta
ttggattttgtaaattattgggatattcaccgtcaccaattgccgtacgagactgatggg
gtagtggtaaaagtaaacaatctgcaacagcaggaagagcttgggtacactgccaaatct
ccaagatgggctatggcgtacaaatttaaggccgaacgggtttcaaccgtattaaaccaa
attacctatcagattggccggacgggtgcaataacgcccgttgcaaatttggaacctgtg
gaattggcaggaacaattgtaaaacgcgcgtcgcttcacaacgcagatcaaattgaaaag
ctcgatattcgtgaaggcgacacggtttttgttgaaaaaggcggcgagattattccaaag
ataatcggggtagattttactcagcgcgacccaaatacaaatcctacaaattatataaac
caatgtcccgagtgcagcacgcctttggttcgcaatgaaggtgaagcccagcattattgc
ccaaatgcagctggttgtccgccgcagattattgggcgaattcaacattttatttcgcgg
aaggcgatggatattgaaggtttgggtggcgaaactgtggcgcttttagtgaataacggt
ctaattaataactatgcagatctgtatcttttaaaagccgaacagataattccactggaa
cgaatggcgcaaaaaagtgccgaaaatattgtgacgggaattgaagcttcgaaacacatt
ccttttgaacgagttcttttcggactgggaattcgttacgtgggcgaaaccgtagccaaa
aaactggcaaagcactacaaaaccattgacgccttaagaaatgcttccgaagaagaactt
accaccattgatgaaattggggaacgcatagctcaaagtgtagtttcattttttgcttct
gaagaaaatatcgctatcattgaaagactgaaaagttacggggtgcagctggaaatttca
gcagaaaaattggctaatcaaaccgaagtattaaaaggaagcacctttgtagtttctgga
gtttttacaaaagtttcacgcaacgaattaaaaaaattgattgaggacaacggcggaaag
gtatccagttccatttcgtctaaaactaattatgttgtggcgggcgataatatggggccg
agtaaaaaaacaaaagctgagagtttggatatttcaataatatctgaagatgaattttta
caaatgattgcaaattaa
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