Aestuariibaculum sp. YM273: RBH94_16030
Help
Entry
RBH94_16030 CDS
T09314
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03030
DNA replication
aest03410
Base excision repair
aest03420
Nucleotide excision repair
aest03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBH94_16030 (ligA)
03410 Base excision repair
RBH94_16030 (ligA)
03420 Nucleotide excision repair
RBH94_16030 (ligA)
03430 Mismatch repair
RBH94_16030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aest03032
]
RBH94_16030 (ligA)
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_16030 (ligA)
Enzymes [BR:
aest01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBH94_16030 (ligA)
DNA replication proteins [BR:
aest03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBH94_16030 (ligA)
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBH94_16030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBH94_16030 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBH94_16030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBH94_16030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
RNA_lig_T4_1
Bac_small_YrzI
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WMI65560
LinkDB
All DBs
Position
complement(3730955..3732955)
Genome browser
AA seq
666 aa
AA seq
DB search
MNTEQQIKKLRDELNQHNYNYYVLDTPVISDYDFDLKLKELQDLEAKHPEFFDANSPTQR
VGGAVTKNFETVAHEYRMYSLDNSYSKEDLQDWETRIKKMVDGDIQYTCELKYDGASISL
TYENGKLVKAVTRGDGFQGDNVTANVRTIKSVPLELKGDFPEKFDIRGEIILPFDGFNKM
NEERIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNLTGTNLGVNSQFESLDKA
RQWGFKVPNAAKLTNSIDEVLEFIDYWNEERHNLPYETDGVVIKVNNLQQQEELGYTAKA
PRWAMAYKFKAEQVSTRLNSITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIAK
LDIRVGDEVYVEKGGEIIPKILGVDLSLRPLDSVPTEYITRCPECQTELVRQEGEAQHYC
PNYNGCEPQIIGRIQHYISRKAMDIEGLGGETVTLLVKAGLISNCSDLYELTKEQVVPLE
RMAEKSAENLVKGIEASKSIPFERVLYALGIRYVGETVAKKLAKHYKSIDAIAQATQDEL
VNVDEIGVKIAESVLAFFASEENLNIIERLKSFGVQLEISAEELQGQTDILKGQSIVVSG
VFEIVSRGELKKLIEDNGGKVSSSISSKTSFLVAGDKMGPSKLKKAESLNIAIKSESEFL
QMISFG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagaacaacagataaaaaaacttagagacgaattaaatcagcataattataac
tattatgttttagatactccggtaatttcagattatgatttcgatttaaagttgaaagaa
ttgcaagatctggaagcaaaacaccctgagttttttgatgctaattcgccaacgcagcgt
gttggtggtgctgtgactaaaaattttgaaacggttgcgcatgagtatcgtatgtattct
ctagataattcatattctaaagaagatttgcaggattgggaaacgcgtattaaaaaaatg
gtcgatggagacattcaatatacttgcgagttaaaatacgatggtgcttcaataagttta
acttatgaaaatggtaagcttgtaaaagccgttactcgaggtgatggttttcaaggtgat
aatgtgacagcgaatgtacgtaccataaaatcagttccactagaattaaaaggtgatttt
cctgagaaatttgatattcgtggtgaaattattttgccttttgatggtttcaataaaatg
aatgaagagcgtattgaaataggtgaggagccttatagaaatccaagaaatacggcttca
ggaagtttaaaacttcaggatagtgcagaggtggctaagcgtccgttagaatgtttgtta
tataatttaacgggaaccaatttaggagttaattcacaatttgagagtttagataaagcc
aggcaatgggggtttaaagtaccaaatgcagcgaaactaaccaattcgattgatgaagtt
ctggaatttattgattattggaatgaagaacgccataatctcccgtacgaaactgatgga
gtggttataaaggtgaataatctgcaacaacaggaagaattaggttatacagccaaagcg
ccacgatgggcaatggcttataaatttaaggcagagcaggtgtctacccgattaaatagt
atcacctatcaagtggggcgcaccggagctataacgcctgttgctaatttagaacctgtg
gaattggcaggaactactgttaaacgtgcgtcgttacacaatgccgatcagattgcaaaa
ttggatattagagtaggagatgaagtatatgttgagaaaggcggcgaaattattccaaaa
attttaggtgttgacttatctctgcgtccgttggattctgttcctaccgaatacatcacg
cggtgtccggaatgtcaaaccgagttggtgaggcaagaaggggaagctcagcattattgt
cctaattataatggttgtgaaccccaaattattggtcgtattcagcattatatttctcgt
aaagcgatggatatagaaggtttagggggtgaaacagtgactttacttgtaaaagcgggt
cttattagtaattgttcagatttatacgaattaactaaagagcaggttgttccgttagag
cgtatggcggaaaaaagtgcagagaacttagttaagggtatagaggcttctaaaagcatt
ccttttgaacgcgtattgtatgctttaggaattcgttatgtaggagaaacggtagcaaaa
aagttagctaagcattataaaagtattgatgctattgctcaggccacccaagatgaatta
gtgaatgtggatgagattggtgtaaaaatagcagaaagtgttctggcgttttttgcttct
gaagaaaacctcaatatcattgaaaggttgaaatcttttggagtacagttagaaatctcg
gcagaagagcttcagggacaaaccgatattttaaaagggcagagtattgtggtttctgga
gtgttcgaaatagtctcaagaggagaacttaaaaagctaatcgaagataacggaggtaaa
gtaagcagttcaatatcgtcgaaaacaagctttttggttgcgggtgataaaatggggcca
agtaagttaaaaaaggcggaaagcttgaatattgctataaaatccgaatctgaattctta
caaatgataagcttcggataa
DBGET
integrated database retrieval system
