Arsenophonus apicola ArsBeeUS: LDL57_04595
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Entry
LDL57_04595 CDS
T07906
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aet
Arsenophonus apicola ArsBeeUS
Pathway
aet03030
DNA replication
aet03410
Base excision repair
aet03420
Nucleotide excision repair
aet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL57_04595 (ligA)
03410 Base excision repair
LDL57_04595 (ligA)
03420 Nucleotide excision repair
LDL57_04595 (ligA)
03430 Mismatch repair
LDL57_04595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aet03032
]
LDL57_04595 (ligA)
03400 DNA repair and recombination proteins [BR:
aet03400
]
LDL57_04595 (ligA)
Enzymes [BR:
aet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LDL57_04595 (ligA)
DNA replication proteins [BR:
aet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDL57_04595 (ligA)
DNA repair and recombination proteins [BR:
aet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LDL57_04595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDL57_04595 (ligA)
MMR (mismatch excision repair)
DNA ligase
LDL57_04595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL57_04595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UBX29925
LinkDB
All DBs
Position
1036675..1038687
Genome browser
AA seq
670 aa
AA seq
DB search
MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRMMQELKKLEAEHPEWITADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRLKNNSQLTFCCELKLDGLA
VSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVFMTHRG
FEKLNEEARRDDGKIFANPRNAAAGSLRQLDPRITAKRPLSFFCYGFGLLAGGQLPASHY
QCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHERLGLGFDIDGVVIKVDPLQLQEQL
GFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHN
ADEIGRLGVRIGDTVVIRRAGDVIPQIVNVLADRRPIDSREIRFPIHCPVCGSAIERIEG
EAVIRCTGGLICAAQRKGALKHFVSRRAMDIEGMGDKIIDQLVDKEYVTTAADLYRLNLD
ILARLERMGPKSAQNLINALDKSKQTTLARFIYALGIREVGEATASNLATHYTTLTSLMA
ADIESLKKVQDVGEIVAKHIVNFFREQHNRDVVNQLVNEIGISWPAMPAKKTDSAFTGKT
IVLTGTLNRLTRDELKDKLILLGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIRTINE
DELIVLLEDH
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacaacaaaattatcttgcacggcttaaacagcaattacggcatcatgaatat
ctttatcatgtattagatacgcctgaaatacctgatgcagaatatgatcggatgatgcag
gaattgaaaaaattagaggctgagcatccagaatggatcacggctgattcgccaacacaa
cgagtcggtgctgcgccattaacggcttttgagcaggtacgccatgaaataccgatgctg
tctctagataacgtttttgatgaagagagttatttagcttttgataaacgagtgcatgat
cgtttaaaaaataatagtcagttgacattttgttgtgagcttaaattagatggtttagca
gtcagtttgttatatgaacagggtgaactggtacaagcagctacgcggggtgatggtacc
accggcgaaaatataactgccaatattcgtactattcgagcaattccgctgcgtttaacc
ggcgataatattcctgagcggattgaaattcgtggtgaagtttttatgacccatcggggg
tttgaaaagctaaatgaagaagctcggcgtgatgatggtaaaatttttgccaatccacgt
aatgccgcggcaggctcattacgtcagcttgatccccgtattactgccaaaaggcccttg
tcctttttttgttatggttttggccttctggccggtgggcaattacctgctagccattat
caatgtcttatgcagtttaaaaaatggggattacccgttagtgataagatagcgctttgc
caaaatagccaacaagttttagcctattatcaccaaattgagcatgaacgtttaggctta
ggttttgatatcgatggtgtcgttataaaagtggatccattgcaattgcaagaacagctc
ggttttgttgcccgtgcgccgcgttgggcgacagcatttaaatttccagctcaagaacag
ataactttattacatgatgttgaatttcaagtggggcgtaccggtgctattacgccagtt
gctcgattagagcctgttcaggttgcaggtgttactgtaagtaatgcaacattgcacaat
gctgatgagataggccgattaggtgtacgcattggggataccgtcgttattcgccgagcg
ggtgatgtgatcccgcagattgttaatgtactggctgatcgtcgtcctattgatagccga
gaaattcggtttcctattcactgtccggtttgtggttcagccattgagcgtattgaaggt
gaggcggtgatccgttgtactggcggtttaatttgtgcggcacaacgtaaaggcgcctta
aagcactttgtttcacgccgagcaatggatattgaaggaatgggtgataagattattgat
caattggttgataaagagtatgtaacgacagcggctgatctttaccgtttaaatctggat
attttagccagattagagcgtatggggccaaagtcggcacaaaacttaattaatgcgctt
gataaatccaaacaaaccacattagcccgctttatttatgcgttgggtattcgggaggta
ggggaagcaacggcaagcaatttggcgacccattataccacgttaacttctcttatggct
gccgatatagagtcgctcaaaaaggttcaagatgttggcgagatagtggcgaagcatatt
gttaatttttttcgcgaacagcataaccgggatgttgttaatcaattagtgaacgaaatt
ggtattagctggccagccatgccggctaagaaaaccgatagtgcattcactggtaaaaca
atagttttaaccggtacattaaatcgtttaacacgtgatgagctaaaagataaattaata
ttacttggcgcaaaagtcacgggcagtgtttctaaaaaaaccgatctagtgattgcaggt
gaggccgctggttctaaattggccaaggccaatgagttaggaataagaactattaatgag
gatgaattaatagtgttactcgaagatcattaa
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