Aequorivita sp. H23M31: EI546_02450
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Entry
EI546_02450 CDS
T05794
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aev
Aequorivita sp. H23M31
Pathway
aev03030
DNA replication
aev03410
Base excision repair
aev03420
Nucleotide excision repair
aev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EI546_02450 (ligA)
03410 Base excision repair
EI546_02450 (ligA)
03420 Nucleotide excision repair
EI546_02450 (ligA)
03430 Mismatch repair
EI546_02450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aev03032
]
EI546_02450 (ligA)
03400 DNA repair and recombination proteins [BR:
aev03400
]
EI546_02450 (ligA)
Enzymes [BR:
aev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EI546_02450 (ligA)
DNA replication proteins [BR:
aev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EI546_02450 (ligA)
DNA repair and recombination proteins [BR:
aev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EI546_02450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EI546_02450 (ligA)
MMR (mismatch excision repair)
DNA ligase
EI546_02450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EI546_02450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Auto_anti-p27
HHH_5
HHH
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QAA80656
UniProt:
A0A410G057
LinkDB
All DBs
Position
complement(528967..531405)
Genome browser
AA seq
812 aa
AA seq
DB search
MNIEQQIISLRNELSEHNYNYYVLDNPTISDFEFDQKLNDLQVLEQAHPEYYDANSPTLR
VGGEITKNFETVPHTYRMYSLENSYSKEDLEDWEKRIEKMVDGAVEFTCELKYDGASISL
TYEDGQLKRAVTRGDGFRGDDITANVRTIRSVPLHLRGDYPPLFDIRGEIVLPFEGFAKM
NAERVELGEEPYRNPRNTASGSLKLQDSAEVARRPLDCLLYNLQGERLPVKTQFESLEKA
RQWGFKVPEAAKLAKNLDEVLEFVNYWDIHRHELPYETDGVVVKVNSLQQQEELGYTAKS
PRWAMAYKFKAEQVSTLLHQITYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQIQK
LDIREGDTVFVEKGGEIIPKIIGVDFTQRDPNSSPTKYITECPECGTPLVRAEGEAQHYC
PNVEVCPPQIIGRIQHFTSRKAMDIEGLGKGIIEILYYNGLIQNYSDLYYLKYEKIIGLE
RWLDNETAGLKYKNHLQVDLKTAIFGLSYKWGNLTLKDSELLSSEIHSIKDILNYKVDNT
NSYGKKLLKLQYKLKNSLKSIDLENFPSLEGYVSFNLLLQLKFPEICALDLFKKDEFYNL
NYIDESLKLSNYNRVKDFEPFIIKLADRNRISIQDLTASNMLLAIEASKSRDFDKVLFAI
GIKDVGEVGAKNLAIHFKNLNNLMNATYEDLISIRDVGNSVAINILEFFASERNLEIIER
LKVAGLKFEIVEKELGSNKLEGMTFVVSGTFSIERNELKRIIEDNGGKNVSSLSKNTSFL
IVGENMGPSKKLRAEKDNIKMISEKDFFNMLL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcgaacaacaaattatctcacttcgcaacgaactcagcgaacacaactataat
tattatgtactggacaatcccacgatttcagattttgaatttgaccagaaattaaacgat
cttcaggttctggagcaggcgcatcccgaatattacgatgccaattcgcccacgcttaga
gtgggcggtgaaatcaccaaaaactttgaaacggtaccccacacttatagaatgtactcc
cttgaaaattcctattcgaaagaagatcttgaagactgggagaagcgcattgaaaaaatg
gtcgatggagccgtagagtttacttgcgagcttaaatatgatggcgcttcaataagcctg
acttatgaagatggccaattaaaaagggcggtaaccagaggcgatggatttcggggagat
gatattactgctaatgttagaacgattagatctgttccgttgcatttgcgtggggattat
cctccgctttttgatattcgcggggaaattgtgttgccctttgaaggatttgcaaaaatg
aatgccgaaagggtagagttaggggaagagccgtatcgaaatccgcgcaataccgcctct
ggaagtttgaaattacaggatagtgcggaggttgcgagacggcctttggattgcttgctc
tataatttacaaggagaacgattgcctgtaaagacccaatttgaaagtcttgaaaaagcc
agacaatggggttttaaagtgcccgaagcagctaagcttgcaaaaaatctggatgaggta
ctggaatttgtaaattattgggatattcacagacacgaacttccatatgaaaccgatgga
gtagtagtaaaagtaaacagtctacaacagcaggaagagctcggttatacagctaaatct
cctcgttgggcgatggcctacaaatttaaagcggaacaagtttctacacttttgcatcaa
attacctatcaagttggaagaactggggcaattactccagttgcaaatcttgaacctgtg
gagttggcaggaaccattgtaaaacgagcctcgcttcataatgccgatcaaatacaaaaa
ctggatattcgtgaaggagatacagtttttgttgaaaagggcggagaaattatccctaag
ataatcggagttgattttacccaacgcgatcccaattcttcccctacaaaatatattacc
gaatgtcccgagtgtggaactcccttagttcgcgctgaaggcgaagctcaacattactgc
cccaacgtcgaagtttgtccgccccagataattggtaggattcagcattttacttcccga
aaggcaatggatattgaagggttgggcaaaggaattattgagattctgtattataatggt
ttaatccaaaattattcagatttatattatttaaaatatgaaaaaattataggtctagaa
agatggcttgataacgagaccgctggattgaaatataaaaatcacctccaggtagatctt
aaaaccgccatttttggattaagttataaatggggaaatttaactttaaaggattctgaa
ttattaagtagcgaaatacacagtattaaagatatcctaaattacaaagtagataacacg
aattcctatggaaagaaattattaaagttacagtacaaactgaagaattcattaaaatcc
attgatttggaaaatttcccttcattagaaggatacgtttcctttaatctgttgttacaa
ttgaagtttcctgaaatttgtgcattagatttatttaagaaagatgaattctataatttg
aattatatagatgaaagcttaaaattaagtaattacaacagagttaaagattttgaacca
tttataattaaattagcagacaggaataggataagtatccaagatttaacagcaagtaac
atgcttttagcgattgaagcgtccaagagccgtgattttgataaagtattatttgctatt
ggaattaaagatgttggggaagtcggagctaaaaacctggctattcattttaaaaattta
aataatttaatgaatgccacttatgaggatctaatttcgattcgtgatgtcggtaattct
gtagctataaatattcttgagttttttgcaagtgaaagaaatttagaaattattgaaaga
ctgaaagttgccggattaaaatttgaaatagtggaaaaggagcttgggtcgaataaactg
gagggcatgacatttgtcgtttcgggaacgttttcaattgaaaggaatgaattgaaaaga
ataattgaagataatggtggcaaaaatgtaagctccttaagtaaaaacacttctttttta
attgtgggagagaatatgggtccctcgaagaaactaagagctgaaaaggacaatataaaa
atgatttctgagaaagatttttttaatatgttattatga
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