Asticcacaulis excentricus: Astex_1668
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Entry
Astex_1668 CDS
T01378
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aex
Asticcacaulis excentricus
Pathway
aex03030
DNA replication
aex03410
Base excision repair
aex03420
Nucleotide excision repair
aex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Astex_1668
03410 Base excision repair
Astex_1668
03420 Nucleotide excision repair
Astex_1668
03430 Mismatch repair
Astex_1668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aex03032
]
Astex_1668
03400 DNA repair and recombination proteins [BR:
aex03400
]
Astex_1668
Enzymes [BR:
aex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Astex_1668
DNA replication proteins [BR:
aex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Astex_1668
DNA repair and recombination proteins [BR:
aex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Astex_1668
NER (nucleotide excision repair)
GGR (global genome repair) factors
Astex_1668
MMR (mismatch excision repair)
DNA ligase
Astex_1668
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Astex_1668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADU13334
UniProt:
E8RR16
LinkDB
All DBs
Position
1:complement(1797433..1799526)
Genome browser
AA seq
697 aa
AA seq
DB search
MTTHPPDTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDLHTV
DSPTEQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVE
PKIDGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGE
VYYPLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDP
RFVTTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDR
LDYQRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVV
SNVTLHNADEIARKDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVFPTVCPCPLK
TAVARELNLKGEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQLQKFSEEGL
IREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPLDRFIAALGVKGVG
ETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVAALIEFFSNDHNVG
IYMRFVAQLSVQDAEAVAGDSAVSGKTVVFTGTLEKMTRDEAKAQAERLGAKVAGSVSAK
THIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFIGAV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacacccacccgatacggcgcagacgcgccacgcacagctttctaccgagatc
aagcaccaccgcgatctctactataatcaggaagcgcccgaactcactgacgccgaatac
gacgcgctggagcaggagttgcgcgcgctggaggcgcagtatccggacctgcatacggtc
gatagtccgaccgaacaggtgggggccgagatttcgagcaagtttgctccggttcagcac
ggcgtgcccatgctgtcgctcgacaatgcctttgcgccggaagacgtggccgattttgaa
aagagcatccgtcgcttcctgcgcctgccgccggaagaggagctggctttcgcggtggag
cccaagatcgacggtctgtcctgttcgctgctgtacgtgaatggcaagctggtgcgggcg
gcgacgcgcggcgacgggcgcacgggcgaagacatcactgaaaacgtacgtaccatcaag
gacgtgccgcacgtgttgagcggcagggaccatcccgaacgcatcgaaatccgcggcgag
gtctattacccgctggccgattttgcggccatgaacgccaagtccgccgaagagggcggt
aaggtttttgccaatccgcgcaatgcagcgtccggcgcgctgcggcaactggatgccact
attaccgcctcgcggccactgcgctttttcgcctatacctggggagaggtcagcgatccg
cggtttgtcacgacacagaccgaagcgctggccaagttccacgaatgggggtttcaggtc
aatccgcgctcggccacgaccgaaaacagcgatggtttgctgaagatttatgaagcgatt
cagcgcgaccggtcgagcctcggttacgacatcgatggcgtggtctataaggtcgatcgg
cttgattatcagcgccggctgggcttcgtctcgcgctcgccgcgatgggccattgcgcac
aagtttccggcggaacaggccctgacccaccttaaggccatcgacattcaggtcggacgt
atcggcacgctgacgcctgtggcgcggctggagccggttaatgttggcggcgtggtggtg
tcgaacgtgaccttacacaatgccgatgaaatcgcgcgcaaagatatccgcatcggcgat
ctggtccgggtgcagcgcgcgggagatgtcatcccgcagattgtcggggtcgagctatct
gagcgtcaggagggcacggaaccctatgtatttccgacggtctgcccatgtccgctgaaa
accgctgtggcgcgcgagttaaacctgaaaggtgaggagggggtggcgcgtcgctgctcc
ggcgaacacgcctgcccgcatcagcgcgtcgaatatctgaaatacgtcgtcagccgtaag
gtgctcgacatcgagggcctgggcgaaaagcagcttcaaaagtttagcgaagaaggacta
atccgtgaaccggcggacatcttcacgctcgaggcgcgcgacaagacgtccctgacgccg
ctgcgtaatcgcgaaggcatgggcgagacctcagcgcgcaacctgttcaaggccattgaa
gatcgccgacaactgccgctggaccgctttatcgccgctttgggggtcaagggggtgggg
gagaccacggcgcgtctgctggcgcgggcctatcactctgaaagcaccttccgcgacgct
atgatagcgctggctgcgggggatgaagaggtaaaggcggcgctcgataatatggatcag
gttgggccgtctttggtggctgcgctgatcgagttcttctccaatgaccacaatgtcggc
atctatatgcgctttgtggcgcaactcagcgttcaggatgccgaggccgtggccggtgat
tcggcggtgtcgggcaagacggtcgtgtttacgggcacgctggagaagatgacgcgtgat
gaggccaaggcgcaggccgaacggttgggggccaaggtagcgggttcagtctcggccaag
acgcatatcgtagtcgcgggaccgggcgcgggttcaaagctcaagaaagccgcggagctg
ggcgttcaggtgatgaccgaggacgaatggctggcctttatcggggcggtgtaa
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integrated database retrieval system
