Anoplopoma fimbria (sablefish): 129090064
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Entry
129090064 CDS
T09102
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04010
MAPK signaling pathway
afb04020
Calcium signaling pathway
afb04510
Focal adhesion
afb04540
Gap junction
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
afb01001
]
129090064 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
afb04090
]
129090064 (pdgfrb)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129090064 (pdgfrb)
Protein kinases [BR:
afb01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129090064 (pdgfrb)
CD molecules [BR:
afb04090
]
Proteins
129090064 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
Adeno_E3_CR1
C2-set_2
RIFIN
VEGFR1-3_N_Ig-like
Ig_VEGFR-1-like_5th
AMP-binding_C_2
VEGFR-1-like_Ig-like
LRRC37AB_C
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
129090064
NCBI-ProteinID:
XP_054453534
LinkDB
All DBs
Position
4:complement(12160344..12185911)
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AA seq
1104 aa
AA seq
DB search
MRGVTASTLHLTVTVTAALLYFCTELRCLEITPDDRELVLAEGSSLTLTCSGSEDTRWEF
KRDDVPYFQVEQVQSDGQSYQIVQSSVTSSVLTLRNVSWKHTGVYQCTDRHTEETKDVAV
FVPDPDVWFIESSHGMVTKTSEESTIPCVITNPNINVTLYERDTDLPVRGLYVPSEGYKA
SLEDRTYVCRGELNDEVKESQAFYVFSIVVPEAIDAYINASQTILKQGEPLTVNCTVHGV
ELVFFSWDIPNREVVKVDPLTEFLPVMYMRSCLIFPQATVAHSGNYVCHVHESIQDQKAS
ASINITVLERGFVDVKDAQQKNISAKLQENVELRVEVEAYPPPQVRWSKDGAYIKGDKTI
TTRREDEIRYVTMLTLVRVRKEQKGRYTVLVTNGDDTEEVTFDLEVQVPSQIKDLTDHHL
PGKRHLVTCVAEGVPTPTIQWYSCDSMHQCSNQTTVWQPLIPDPELLSIRTNVSYSETRK
TSQVRSQVTFHKPQQVTVRCETSNQAGLIDRRDVKLVSSTLYSQVAVLAAVLALVVIIII
SIIILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLG
SGAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNL
LGACTKHGPLYLVTEYCRYGDLVDYLHRNKHTLLQYQAEKNQDDGCLISGRSTPLSQRKG
YVSFGSESDGGYMDMSKDEPTIYVPMQEQMDTIKYADIQPSPYESPYQQDIYQEQDGSRS
DLAISDSSILTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTMGGTPYPDLP
MNELFYSALKRGYRMAKPAHASEEVYDIMKKCWDEKFEKRPDFSFLVHSVGNMLADSYKK
KYSQVNDNFLKSDHPAVARTKPRLSSPFPIANPAFGTPSPHYIPPDPYNHSPSPGEFRQE
ADTQEVMTSYNEYIIPIPDPKPEDVFTDAPSESPASSLALEEETDSMSQDTADTLPEEDR
LEETSERDALLGFSGTPEVEDSFL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcgtgacggcatccacgctccatctgacagtaacagtaacagcagctctcctc
tatttctgcactgagctgcgttgtctggagatcacacccgatgacagagagcttgtcctg
gcagagggctcctctctcaccctcacctgctccggctcagaggacactaggtgggagttc
aagagggatgatgtgccttacttccaagtggaacaagttcagagcgatggccaaagctac
caaattgtgcaaagcagcgtcacatccagtgttttgaccttgaggaacgtgagctggaag
cacacaggggtgtatcagtgcaccgatcgacacactgaagaaactaaggatgtggctgtt
tttgtaccagaccctgatgtgtggttcatagagagctcacacggcatggtaacaaagacc
agtgaggagagcaccatcccctgtgtgatcaccaatcccaacatcaatgtcaccctgtac
gagagggacactgatctgcccgtcagggggctttatgtgcctagtgaggggtacaaggca
tcgctggaggacaggacctatgtgtgtcggggggagctgaacgacgaggttaaagagtct
caggccttctacgtcttcagcattgtcgtccctgaggccatcgacgcctacatcaatgcg
tcacagaccatcctgaaacagggcgaaccgctgacagtaaactgcacagtgcacggagtg
gagctggtgtttttttcctgggatatccccaacagagaggttgttaaggtcgatccactg
acagaattcctacctgtcatgtacatgcgctcctgcctgatcttccctcaggccacggtg
gcccacagcggaaactacgtctgccatgtccacgagagcatccaagaccagaaggcctct
gccagcatcaacatcactgtgctcgagcgaggctttgtggatgtgaaggatgctcagcaa
aaaaacatttcagcaaagctgcaagagaacgtggagttgagagtggaggttgaggcctac
cctccccctcaggtccgctggagcaaagacggcgcctacatcaagggagataaaaccatc
acaaccagaagagaggatgagatcaggtatgtcactatgctcaccttggtgagggtgagg
aaggaacagaaaggccgctacactgtcctcgtcacaaacggagatgacacagaggaagtg
acctttgacctagaggtccaagtcccctctcagattaaagacctgactgaccaccacctc
cctgggaagagacacttggtgacctgtgtagctgagggggtcccaaccccgaccatccag
tggtacagctgtgacagcatgcaccagtgtagcaaccaaacaacggtgtggcagccgctg
ataccagaccccgagctgctgagcatccggaccaatgtcagctacagcgagactcgaaaa
accagccaggtgcggagccaggtgaccttccacaagcctcagcaggtcacagtgcgctgt
gagaccagcaaccaggcaggactcatcgacaggagagacgtcaaactggtgtcaagcaca
ctttactcccaggtggcagtattggctgctgttttagccttagtggtcatcatcatcata
tctatcatcatcctcattgctgtgtggagaaagaagccacgctatgagatcagatggaag
gtgatagagtcagtgagccaggacggtcatgagtacatctatgtggaccccatccacctg
ccctatgacctggcctgggagatgccacgagacaacctggtgctgggtcgcactcttgga
tcaggagcctttggcagggtggtcgaggcaactgcgtatggactcactcattcccagtcc
agcacaaaagtggccgtgaaaatgctgaaatctacagccaggaggagtgagactcaggct
ctgatgtcagagttgaagatcatgagtcacctgggtcctcacctcaacatcgtcaacttg
ctgggagcttgcaccaaacatggccctctgtatctagtgactgagtactgtcgctatggc
gacctggtggactacctgcacaggaacaagcacaccctcctgcagtaccaagcagagaag
aaccaagacgacggctgcctcatctctggaagaagcactccgctcagccagaggaaaggc
tacgtgtccttcggaagtgagagtgatggaggttacatggacatgagtaaagacgagccc
accatctacgtgcccatgcaggagcagatggacaccatcaagtacgcggacatccaaccc
tctccatatgagtcgccctaccagcaggacatctatcaggaacaagatggcagcagatcg
gacctggccatcagtgactcttccattctcacctacgatgatctgttgggcttcagctat
caagtggcaaaggggatggagtttctcgcctccaagaattgtgtccatcgtgacctcgca
gccaggaatgtgctgatctgcgagggcaaactggtgaagatctgtgactttggactggcc
agagacatcatgcatgattccaactacatctctaaaggcagcaccttcttgccgctgaaa
tggatggcaccagaaagtattttccataatttgtacaccaccctgagtgacgtgtggtca
tacggcattcttctttgggagattttcactatgggaggaaccccctaccctgatttgccc
atgaacgagttgttctacagcgctttgaaaagaggctaccgaatggccaaacctgcacat
gcctctgaagaagtttatgacatcatgaagaagtgctgggatgagaagtttgagaaaagg
ccagacttctcctttctggtccacagtgttgggaacatgctggcagacagctacaaaaag
aaatacagccaagtcaacgataacttcctgaagagtgaccacccggcagtcgcccgcacc
aaacccagactctcctccccatttccgatcgccaacccagcattcggcaccccgtccccc
cattacatccccccggacccctacaaccatagcccgagccctggagaattcagacaagag
gcagacacacaggaagtcatgacttcatacaacgaatacatcattcccatccccgacccc
aagccggaggacgttttcactgacgcgccatcagaaagccctgcaagctctctggctctg
gaggaggagaccgactccatgtcgcaggacactgctgacactctcccagaggaggaccgg
ctggaggagaccagtgagagagatgctctgctgggtttctctgggacgcccgaggtagaa
gacagcttcttgtag
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