Anoplopoma fimbria (sablefish): 129090064
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Entry
129090064 CDS
T09102
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04010
MAPK signaling pathway
afb04020
Calcium signaling pathway
afb04510
Focal adhesion
afb04518
Integrin signaling
afb04519
Cadherin signaling
afb04540
Gap junction
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129090064 (pdgfrb)
04020 Calcium signaling pathway
129090064 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
129090064 (pdgfrb)
04519 Cadherin signaling
129090064 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129090064 (pdgfrb)
04540 Gap junction
129090064 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
129090064 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
afb01001
]
129090064 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
afb04090
]
129090064 (pdgfrb)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129090064 (pdgfrb)
Protein kinases [BR:
afb01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129090064 (pdgfrb)
CD molecules [BR:
afb04090
]
Proteins
129090064 (pdgfrb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
VEGFR1-3_N_Ig-like
ig
Ig_VEGFR-1-like_5th
V-set
Adeno_E3_CR1
C2-set_2
RIFIN
Beta-prop_CGLA
AMP-binding_C_2
VEGFR-1-like_Ig-like
LRRC37AB_C
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
129090064
NCBI-ProteinID:
XP_054453534
LinkDB
All DBs
Position
4
Genome browser
AA seq
1104 aa
AA seq
DB search
MRGVTASTLHLTVTVTAALLYFCTELRCLEITPDDRELVLAEGSSLTLTCSGSEDTRWEF
KRDDVPYFQVEQVQSDGQSYQIVQSSVTSSVLTLRNVSWKHTGVYQCTDRHTEETKDVAV
FVPDPDVWFIESSHGMVTKTSEESTIPCVITNPNINVTLYERDTDLPVRGLYVPSEGYKA
SLEDRTYVCRGELNDEVKESQAFYVFSIVVPEAIDAYINASQTILKQGEPLTVNCTVHGV
ELVFFSWDIPNREVVKVDPLTEFLPVMYMRSCLIFPQATVAHSGNYVCHVHESIQDQKAS
ASINITVLERGFVDVKDAQQKNISAKLQENVELRVEVEAYPPPQVRWSKDGAYIKGDKTI
TTRREDEIRYVTMLTLVRVRKEQKGRYTVLVTNGDDTEEVTFDLEVQVPSQIKDLTDHHL
PGKRHLVTCVAEGVPTPTIQWYSCDSMHQCSNQTTVWQPLIPDPELLSIRTNVSYSETRK
TSQVRSQVTFHKPQQVTVRCETSNQAGLIDRRDVKLVSSTLYSQVAVLAAVLALVVIIII
SIIILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLG
SGAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNL
LGACTKHGPLYLVTEYCRYGDLVDYLHRNKHTLLQYQAEKNQDDGCLISGRSTPLSQRKG
YVSFGSESDGGYMDMSKDEPTIYVPMQEQMDTIKYADIQPSPYESPYQQDIYQEQDGSRS
DLAISDSSILTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTMGGTPYPDLP
MNELFYSALKRGYRMAKPAHASEEVYDIMKKCWDEKFEKRPDFSFLVHSVGNMLADSYKK
KYSQVNDNFLKSDHPAVARTKPRLSSPFPIANPAFGTPSPHYIPPDPYNHSPSPGEFRQE
ADTQEVMTSYNEYIIPIPDPKPEDVFTDAPSESPASSLALEEETDSMSQDTADTLPEEDR
LEETSERDALLGFSGTPEVEDSFL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcgtgacggcatccacgctccatctgacagtaacagtaacagcagctctcctc
tatttctgcactgagctgcgttgtctggagatcacacccgatgacagagagcttgtcctg
gcagagggctcctctctcaccctcacctgctccggctcagaggacactaggtgggagttc
aagagggatgatgtgccttacttccaagtggaacaagttcagagcgatggccaaagctac
caaattgtgcaaagcagcgtcacatccagtgttttgaccttgaggaacgtgagctggaag
cacacaggggtgtatcagtgcaccgatcgacacactgaagaaactaaggatgtggctgtt
tttgtaccagaccctgatgtgtggttcatagagagctcacacggcatggtaacaaagacc
agtgaggagagcaccatcccctgtgtgatcaccaatcccaacatcaatgtcaccctgtac
gagagggacactgatctgcccgtcagggggctttatgtgcctagtgaggggtacaaggca
tcgctggaggacaggacctatgtgtgtcggggggagctgaacgacgaggttaaagagtct
caggccttctacgtcttcagcattgtcgtccctgaggccatcgacgcctacatcaatgcg
tcacagaccatcctgaaacagggcgaaccgctgacagtaaactgcacagtgcacggagtg
gagctggtgtttttttcctgggatatccccaacagagaggttgttaaggtcgatccactg
acagaattcctacctgtcatgtacatgcgctcctgcctgatcttccctcaggccacggtg
gcccacagcggaaactacgtctgccatgtccacgagagcatccaagaccagaaggcctct
gccagcatcaacatcactgtgctcgagcgaggctttgtggatgtgaaggatgctcagcaa
aaaaacatttcagcaaagctgcaagagaacgtggagttgagagtggaggttgaggcctac
cctccccctcaggtccgctggagcaaagacggcgcctacatcaagggagataaaaccatc
acaaccagaagagaggatgagatcaggtatgtcactatgctcaccttggtgagggtgagg
aaggaacagaaaggccgctacactgtcctcgtcacaaacggagatgacacagaggaagtg
acctttgacctagaggtccaagtcccctctcagattaaagacctgactgaccaccacctc
cctgggaagagacacttggtgacctgtgtagctgagggggtcccaaccccgaccatccag
tggtacagctgtgacagcatgcaccagtgtagcaaccaaacaacggtgtggcagccgctg
ataccagaccccgagctgctgagcatccggaccaatgtcagctacagcgagactcgaaaa
accagccaggtgcggagccaggtgaccttccacaagcctcagcaggtcacagtgcgctgt
gagaccagcaaccaggcaggactcatcgacaggagagacgtcaaactggtgtcaagcaca
ctttactcccaggtggcagtattggctgctgttttagccttagtggtcatcatcatcata
tctatcatcatcctcattgctgtgtggagaaagaagccacgctatgagatcagatggaag
gtgatagagtcagtgagccaggacggtcatgagtacatctatgtggaccccatccacctg
ccctatgacctggcctgggagatgccacgagacaacctggtgctgggtcgcactcttgga
tcaggagcctttggcagggtggtcgaggcaactgcgtatggactcactcattcccagtcc
agcacaaaagtggccgtgaaaatgctgaaatctacagccaggaggagtgagactcaggct
ctgatgtcagagttgaagatcatgagtcacctgggtcctcacctcaacatcgtcaacttg
ctgggagcttgcaccaaacatggccctctgtatctagtgactgagtactgtcgctatggc
gacctggtggactacctgcacaggaacaagcacaccctcctgcagtaccaagcagagaag
aaccaagacgacggctgcctcatctctggaagaagcactccgctcagccagaggaaaggc
tacgtgtccttcggaagtgagagtgatggaggttacatggacatgagtaaagacgagccc
accatctacgtgcccatgcaggagcagatggacaccatcaagtacgcggacatccaaccc
tctccatatgagtcgccctaccagcaggacatctatcaggaacaagatggcagcagatcg
gacctggccatcagtgactcttccattctcacctacgatgatctgttgggcttcagctat
caagtggcaaaggggatggagtttctcgcctccaagaattgtgtccatcgtgacctcgca
gccaggaatgtgctgatctgcgagggcaaactggtgaagatctgtgactttggactggcc
agagacatcatgcatgattccaactacatctctaaaggcagcaccttcttgccgctgaaa
tggatggcaccagaaagtattttccataatttgtacaccaccctgagtgacgtgtggtca
tacggcattcttctttgggagattttcactatgggaggaaccccctaccctgatttgccc
atgaacgagttgttctacagcgctttgaaaagaggctaccgaatggccaaacctgcacat
gcctctgaagaagtttatgacatcatgaagaagtgctgggatgagaagtttgagaaaagg
ccagacttctcctttctggtccacagtgttgggaacatgctggcagacagctacaaaaag
aaatacagccaagtcaacgataacttcctgaagagtgaccacccggcagtcgcccgcacc
aaacccagactctcctccccatttccgatcgccaacccagcattcggcaccccgtccccc
cattacatccccccggacccctacaaccatagcccgagccctggagaattcagacaagag
gcagacacacaggaagtcatgacttcatacaacgaatacatcattcccatccccgacccc
aagccggaggacgttttcactgacgcgccatcagaaagccctgcaagctctctggctctg
gaggaggagaccgactccatgtcgcaggacactgctgacactctcccagaggaggaccgg
ctggaggagaccagtgagagagatgctctgctgggtttctctgggacgcccgaggtagaa
gacagcttcttgtag
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