Anoplopoma fimbria (sablefish): 129090508
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Entry
129090508 CDS
T09102
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129090508
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Protocadherins
129090508
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
DUF7276
Motif
Other DBs
NCBI-GeneID:
129090508
NCBI-ProteinID:
XP_054454131
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Position
4:13258871..13261357
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AA seq
828 aa
AA seq
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MTKRMGYRDWRWLALWWHHFFLLWSTINGQTRYSIPEELKQGSVVGNLAKDLGLRLSDIF
ERKLRVSSEADEQYFSVDAGKGELVVNERIDREALCGQSASCVLPLQVVLENPLSLHRIE
VEIRDMNDNSPSFHTGDMSLKISETAAVGTRFPLEGAEDSDVGSNSVKTYTLTKNDCFIL
KIKEIEDGKTVPELVLEKPLDREKRAVHQLLLTALDGGNPVMSGTSQITISVLDVNDNFP
VFDKNTYKVSLKENTEKDTFVIQIAATDADEGTNAEVEFSFGSRTPDSVLSVFEIHSLTG
EIYLKGALDYERTTSYKVEITAKDKGVPENESHCRLQIDVLDINDNTPEIVLTSKPQPVR
EDSPSGTVVALVNARDADSGNNSKVTLRLPRGSPFTLKPSFSNNYALVTSGLLDRERFSE
YNIEITATDSGSPPLSSKKTIPVSISDVNDNPPIFTQTSFNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSLSSNATVHVFILDQNDNAPSVIYPSSAALGSLSHQRMPRSAKAGHLVTKVTAVDAD
SGHNAWVSYKLAEATDASLFTVNMYTGEVRTKRAVSEQDDSSQRLLIEIKDDGEPVQSAT
VTVSILLEDGLHEPILDLRQKVAEPSRKTGRITLYLILSLASVSVLSLVTFLILTVKCMR
NSRSSGSCCMTRTDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFRSCMSPMS
EYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVRKKHSRPTV
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaatgggataccgagactggagatggcttgcgctttggtggcatcatttc
tttctcttgtggagtacaataaacggacagactcggtacagcatcccggaggaactcaaa
cagggctctgtggtaggaaatctagccaaagatctgggtttgagactatcagacattttt
gagcgtaaactgcgtgtctcctctgaggctgatgagcagtatttcagtgtggatgcgggg
aagggcgagctggtggtgaacgaaagaattgacagagaggctttatgcggacaaagcgca
agctgtgtactacctctgcaggttgttcttgaaaacccgcttagtttacatcggattgag
gtagaaataagagatatgaatgacaattcgcctagttttcatacaggagatatgtctttg
aagatttctgaaacggcagcagttggaacccgttttccattggagggtgcagaagattct
gacgttggtagtaattcagttaaaacctacactttgaccaaaaacgactgttttattttg
aaaataaaagaaattgaagatggcaaaacagttccggagttagtgttagagaagcccctt
gaccgagagaagagagcagttcatcagctgctactgactgcattagacggggggaaccca
gtcatgtctggtacctcacagattacaatctcagtgcttgacgtaaatgacaattttcca
gtttttgataaaaatacatataaagtttcgttgaaggaaaatactgaaaaagatacgttt
gttatacaaattgcagcaactgatgctgatgagggtactaacgcagaagtagaattctca
tttggctcgcggacaccggattctgtattatcagtatttgaaatacattcattaacagga
gaaatatatttgaaaggagccttagattatgaaagaaccacgtcttacaaagttgaaata
actgcgaaagacaagggggtgcctgagaatgaaagtcactgtcgtttacagatagatgtt
ttagatattaatgataacactccagaaattgttctcacctctaaaccgcagcctgtgcgt
gaagactcaccaagtggcacagtggtggcattggtcaacgcacgtgacgcggactctggt
aataatagtaaagtgacattgcgactacccagaggttcacccttcactttaaaaccatcc
ttttcgaataattatgcactggttacaagtggtttattagaccgagagagattctcagag
tataatattgagatcacagccactgattcaggctctcctcctctatccagtaagaaaacg
atacctgtcagcatcagtgatgtgaatgacaacccccctatattcacacagacctccttt
aatgtgtatttaaaagagaatggggtaccaggctctatactgtactcagtatcagcatct
gacctggattttggtgaaaacgccaaaatctcctactccatcttggactctaaagtgcag
gacgtctctgtctcatcttatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaagctgaaggtgtttcagattcaggttcaggcaaaggatcag
ggctctccgtctctcagcagcaacgccaccgtccatgtttttatcctggaccagaacgac
aacgccccctctgttatttacccctcctccgctgccctgggctccctctctcatcagagg
atgccccgctccgctaaagcgggtcacctggtcactaaggtgacggccgtggacgctgac
tcgggccataacgcctgggtctcctacaaactggcggaggccacggacgcctctctgttc
actgtcaatatgtacacaggggaggtgaggactaaacgcgctgtgtccgagcaggacgac
tcctctcagaggctgcttatagagatcaaggacgacggggaaccggtccagtccgccacc
gtcacggtgtccattctgctggaggacggcctccatgagcccatcttagacctccgacag
aaagtggccgagcccagcaggaaaactgggagaatcaccctttatttgattctctctctg
gcctcggtgtccgtgctgtctctggtgacttttctcatcttaacggtgaaatgcatgagg
aacagcagaagcagcggtagttgctgcatgacacggaccgactgtgatgattacaagaac
cccaacagaaacctgcagattcagctcaacactgatggacctataaagtacgtggaggtc
ctgggaggagacatgatgtctcagagtcagtccttcaggtcctgtatgtctccaatgtca
gagtacagtgatttcactttgattaaacccagcagcaccactgactttaaggaggtgatc
agtgttttggatgcgtctctacccgacagcacctggacctttgagagccagcaggtgaga
aaaaagcatagtagacccactgtgtaa
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