Anoplopoma fimbria (sablefish): 129091025
Help
Entry
129091025 CDS
T09102
Symbol
tiam1b
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04530
Tight junction
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129091025 (tiam1b)
09142 Cell motility
04810 Regulation of actin cytoskeleton
129091025 (tiam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
afb04990
]
129091025 (tiam1b)
Domain-containing proteins not elsewhere classified [BR:
afb04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
129091025 (tiam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
129091025
NCBI-ProteinID:
XP_054454420
LinkDB
All DBs
Position
1:25338926..25386909
Genome browser
AA seq
1599 aa
AA seq
DB search
MGNVESQNGDHALYRNEHGYLSRKHMSRSLRISNKQSRRSRHASSGKIEHRNSETSTRSS
STPSIPQSLADNGLEPFNETNILPDFGSPIWVDRVAMNLRPVSFHNDLANPSVHMTTMHI
TLPGPTAEEVQDEDVYTGEVTYLQKTRDGSKETVSFKKKRSKSADMWRDDSLEFSLSDLS
QEHLTSTEEIIDTTNERDFTDCKVHLQSSTTDSADRANSLDELYSQKCPSRRQPHGRYAK
WHDANRSIREGEDDKMLSPSEEDGNTYGAYTLPCRRSHCLSEGLSSHQAAMCASMQGRRA
QTIQDVTAGEGSEYEDSGIDGVTVEAEQQSRRYKTMSASFSVCSAAGRSMFAGSDSGSSS
GGGASECVQGVYENFRQELEMSSCQTESLEEAGSALSDEQSTMSSAYQSDPLLSVTQGMV
RKAGRLAVKNFLVHKKNKKVESATRRKWKSYWVSLKGCTLFFYETDGRSGIDNNSIPKHA
IWVESSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTCSQTELENWITAIHSACATAVARQH
HREDTVRLLRAEIKKLEQKIDMDEKMKKMGDMQLSAVTDTKKRKTILDQIFLWEQNLEQF
HMDQFRFRCYLASLQGGELPNPKRLLAVASRPTKLAMGRLGIFSVSSFHALVAARSENGV
RRRTQAMSRSCSKRKSRFSSLWGLDTTSKKKTKAHPSINQQVFADGEEPVKKPVDGIFVD
PTKDNTKSEGGTVKSLPRPSTESDIWVPDHLTPSWVCLPNDQPVLTIIQPGESALCVLET
ICKAHQLDPIKHYLRLKFLIENQVQFYIPKPEEDVCDLLYKEIELCSKITKVIQFDRDES
CMIGYGFSISVVEEDGVQQLYITDVKAGGLAFAKGLNAGDEILQLNGKDSHSLNFSDMKV
AFSQASLALTVNTLPSVDRRQLCYLPPRRSDAEEDLYTDIFSQSQEEILDDGVGILLESS
GDSLDDDSEIFSEFECRKSTEQVAAFCRSLHDMNPTECVSSSPSPDSPFPPPATLRQLSD
ADKLRKVICELVETERTYVKDLNCLIGRYLTPLQKETILTQDELDVLFGNLPEMVEFQVE
FLKTLEDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLV
KAKTDTDFKAFLDERNPKQQHSSTLESYLIKPIQRVLKYPLLLKELYSLTDPESEEHYHL
DVAMKAMNKVASHINEMQKIHEEFGAVFDLLITEQSGEKKEFFCQVADLSMGDLLLHTSV
TWINPPASLGKWKKEPQIAVFVFKTAVVFVCKEGSKQKKKMGASHRVSISSEEKDPFRYR
HMIPTDALQVRSLANADGEGSAVCEIVHTKSESEGRPERTFQLCCSSPESRKDFLKTVHS
ILREKHRRQLLKTESLPLNQQYVPFGGKRLCALKGARPAINRAASAPTRTLGRRKLVRNR
FTIDTDIVFDGEPGQEPDSNRLQRDNEPDTPQQSEIAADTDRWVEEQFDLEEYEDQEVVK
ETDILSDEDDEFCQTTRASSTDADLEAPVMALSLESEETNEGESLKSPKASGTPDEVKVS
NTEEQSVVNDGNVEDQKQTEKDEIWVRRQQSGSSPDCGT
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgttgagagccagaatggggaccatgccctctaccgtaacgaacatggctat
ttgtcacgtaagcacatgtctcggtctcttcgcatctccaacaaacagtccagacgctct
cgacatgcttcatcagggaaaatagagcacaggaattctgagacgagcacacgctcaagt
agcacccccagtatcccacaatccctggctgacaatggcctggagcccttcaatgagacg
aatatcctcccagactttggaagccccatttgggtagaccgtgtggccatgaacctgcgg
cctgtgtcctttcacaatgacctggccaatccctcagtgcacatgactacaatgcacata
accctacctggccccacagcagaggaggtgcaggatgaagatgtgtacacaggcgaggta
acataccttcagaaaactcgggacggctccaaggagactgtcagcttcaagaagaagagg
tctaagtctgcagacatgtggcgagatgacagcctggagttctccctgtctgacctcagc
caagagcacttgaccagcacagaggagatcatagacacgaccaacgagagggacttcact
gactgcaaagttcacctacagtccagcaccacagactccgctgacagggcaaactccctg
gacgagctatatagccagaagtgcccttcccgcaggcaaccccacggtcgctatgccaag
tggcatgatgcaaacaggtctattagggagggtgaggacgataagatgctctccccatca
gaggaggatgggaacacctatggtgcatacaccctcccctgccggcgttcccactgcctg
tctgaaggcctgagtagccaccaagctgccatgtgtgccagtatgcagggcaggagggcg
cagactatacaggatgtcaccgccggagagggtagtgagtacgaggacagcggcatcgat
ggggtgacggtggaggcagagcaacagtccagacgctacaagaccatgtcagcctccttc
tccgtgtgctcggcggctggcaggagcatgtttgctggcagcgacagtggcagcagcagt
ggcggtggggccagtgagtgtgtacagggcgtgtacgagaactttcgccaagaactggag
atgagctcctgccagacggagagcttggaggaggcagggtccgccctgagtgacgagcag
agcactatgagctccgcctaccagtctgacccgttgctcagcgtcacccaagggatggtg
cgcaaagctggcaggcttgccgtcaagaacttcctcgtacataagaagaacaagaaagtg
gagtcagccacaaggcgcaagtggaagagttactgggtttccctgaaaggttgcactctg
ttcttctatgagactgatggccgttcagggatcgacaacaacagtattcccaagcatgcc
atctgggtagagagcagtattgtccaggctgtaccagaacatcccaaaaaggactttgtg
ttctgtctcagcaactccctgggagatgcttttctgtttcagacctgcagccagacggag
ctggagaattggatcacagccatccactcggcatgtgccaccgccgtcgcccgacagcac
cacagagaggacacggtgcgcctgcttcgcgcagagatcaagaagctggagcagaagata
gacatggatgagaagatgaagaagatgggagacatgcagctgtcggctgtcacggacaca
aagaagaggaagacgatcctggatcaaatcttcctgtgggagcagaacctagagcagttt
cacatggatcagttccgcttcaggtgctacctagccagcctgcaaggtggagagctgccc
aaccccaaacgcctcctggctgttgcctctcgtcccaccaagctggcaatgggccgactg
gggatattctctgtgtcttccttccatgcactggtggcagctcgctcagagaacggagtg
agacggcgaacacaggccatgtcacgttcctgcagcaagcgtaagagcaggttctcctcc
ctctggggtctggatactacctcaaagaaaaaaacgaaagcccatcccagtatcaaccag
caggtctttgctgatggcgaagagccagtgaaaaagcctgttgatggcatatttgttgat
cccaccaaggataacacaaaaagtgagggtggaactgtgaaaagccttccccggcccagc
acggaaagtgatatctgggtccctgaccacctcaccccctcctgggtgtgtctgccaaat
gaccagccggtgttaaccatcatccagccaggggagtcagcactgtgcgttctggaaacc
atctgcaaggctcaccagctcgatccaatcaagcactacttacgactcaaattccttatc
gaaaaccaagtgcaattctacattcccaaaccagaagaggatgtgtgcgacttgctttac
aaagaaattgagctctgctccaaaattacaaaagtaatccagtttgacagagatgaatcc
tgcatgatcggttacggtttctccatttcagtggtggaggaggacggagtgcagcagctc
tacatcactgatgtgaaggcgggcggattagccttcgccaaaggtctcaatgcaggggat
gaaatacttcagttgaacggaaaagactctcacagtctcaacttttcggacatgaaggta
gctttctctcaagcctcgctggctttgacagtcaacactctgccttctgttgaccgccgt
cagctctgctatctgccgccacgccgttcggatgcggaggaggatctctacacggacatc
ttctcacagagtcaagaggagattctggacgacggggtgggaatactgcttgagagctca
ggagacagccttgacgacgactctgagatcttcagtgagtttgagtgcagaaagagtaca
gagcaagtcgctgctttctgccgcagtctccatgacatgaatcccacggagtgtgtgtcc
tcttcgcctagcccggactcacccttcccaccaccggcaacgctccgacagctctccgat
gctgacaagctccgcaaagtcatctgtgaactcgtggagactgagcgcacctatgtcaaa
gatctcaattgcctcatcgggagatatttaaccccactgcagaaagagaccatcctcaca
caggatgagctggatgtactatttgggaacttgcccgaaatggtggagtttcaggtggag
tttctcaagaccctggaagacgggaccagactagttcctgatctagagaaattggagaga
gtggatcagtttaagaaaatcctcttctccctgggaggctctttcctttactatgcagat
cgttttaaaatctacagtgctttctgcgccagccacaccaaagtccctaaggtccttgtg
aaggccaaaaccgatactgatttcaaggccttcctggatgagcgcaaccccaagcagcag
cactcttcaaccctggagtcatacctgatcaaacccatccagagggtgctgaagtatccc
ctcttgctgaaggagctctactcgctcacagacccagagagtgaggagcactaccacctg
gatgttgccatgaaagccatgaacaaagttgccagccacatcaacgagatgcagaagatc
catgaggagtttggagcagtgttcgatctgctcatcactgagcagagtggtgaaaagaaa
gagtttttttgccaggtggctgatctgtctatgggtgatctgttactccacaccagtgtg
acctggatcaacccccctgcctccctaggaaaatggaagaaagagccccagattgccgta
tttgtcttcaaaacagcagtggtctttgtatgcaaggagggatcaaagcagaaaaagaaa
atgggggcctcccatcgagtctctatatcttcagaagaaaaggatccctttagatatcgc
cacatgatcccaactgatgcccttcaagtcagatccttggccaatgcagatggtgagggc
tcggctgtgtgtgagattgtccacacaaagtcggagtcagagggaaggccagagaggaca
tttcagctgtgctgtagttctccagagagtagaaaagactttctgaagacagtacattcc
atcttgagggaaaagcaccgcaggcagctactaaaaacggagagtttacccctcaaccag
cagtatgtgccctttggtggaaagcgcctctgtgccctgaagggagcccgtccagccata
aatagagcagcatctgcaccaaccaggactctaggcaggaggaagttagtgcgcaaccgt
ttcaccatagacactgatattgtttttgatggcgagcccggacaggagcccgactcaaat
cggctgcagcgggacaacgaaccagatactccgcagcagtctgagatagcagctgacaca
gaccgctgggtggaagaacagttcgacctagaagaatacgaagaccaggaagtggtgaaa
gagacagatatcctaagtgatgaagatgacgagttctgccagactaccagagcatcctcc
actgatgccgacctggaggcccctgtcatggctttgtccttagagagtgaggaaaccaat
gagggcgagagtcttaagtccccaaaggccagtgggacacctgatgaggtgaaggtgtcc
aatacagaggagcagagcgtcgtgaacgatggcaacgtggaggatcaaaaacaaaccgag
aaggatgagatttgggtaagaaggcagcagtcaggctcgtccccagattgtggcacataa
DBGET
integrated database retrieval system
