KEGG   Anoplopoma fimbria (sablefish): 129091188
Entry
129091188         CDS       T09102                                 
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03440  Homologous recombination
afb03460  Fanconi anemia pathway
afb04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    129091188
  09124 Replication and repair
   03440 Homologous recombination
    129091188
   03460 Fanconi anemia pathway
    129091188
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:afb01009]
    129091188
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:afb04121]
    129091188
   03036 Chromosome and associated proteins [BR:afb03036]
    129091188
   03400 DNA repair and recombination proteins [BR:afb03400]
    129091188
Enzymes [BR:afb01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129091188
Protein phosphatases and associated proteins [BR:afb01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     129091188
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    129091188
  Multi subunit type E3
   BRCC complex
    129091188
Chromosome and associated proteins [BR:afb03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     129091188
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     129091188
    BRCA1-A complex
     129091188
    BRCA1-B complex
     129091188
    BRCA1-C complex
     129091188
    BRCA complex
     129091188
   FA (Fanconi anemia) pathway
    Downstream FA components
     129091188
SSDB
Motif
Pfam: BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_4 RTT107_BRCT_5 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX RING_XB3-XBAT31 zf-Nse zf-RING_5 zf-ANAPC11 zf-RING_6 TRAF3_RING zf-MIZ PTCB-BRCT zf-RING_10 zf-rbx1 Sina_RING Baculo_IE-1 zf-RING_4
Other DBs
NCBI-GeneID: 129091188
NCBI-ProteinID: XP_054454679
LinkDB
Position
5:13047794..13070449
AA seq 1423 aa
MTTPTTTDVRKGISVLWETLQCPICLDLMTAPVSTKCDHQFCKFCMMKLLDSTKQNRADC
PVCKTKITKRSLQESPGFQRLVAGLQDMIQAYEQDTGINYFTGMSEQKGQLGVTDAEATK
HCPDKSFGDTPDNVENDDNDDPSRSHSSTLAAQNGFARLMGLEDTSPMTTENDGLDSGLG
EAPPTSDKKMHSPTDNMEPVETEMSEVVETSTHKTRGKKRFLKLEKASHPTSLIPDESEN
KPLRKSSRKKQKKDLVPDKILEEKQKKSREKVAEWLMKVPTEGSLELEKLNEDTDDSDSC
SSASTIDIKKHNSDMNLKRGERAKALEEQVFGAVYKRERRGNRTISPPLNVFIETPTTKE
RQNVSKTKKKNTVTPADFVKKTSSEDESKSHMEEEQQRMEEVNNTSSDIVTKAKQMEVME
ENDKDNMPESDKIDDNEEAPCPASDIEKQLPDRKSDRRTRNAMQQVDSDFQEQAEAKSES
AEQNKTEKRKNKNLRSVKGKPARVPKPLVLVGVKNGETSPKARPRSEEVQVHIENYPSSE
DREIPIMRNTRRSRRLQLFAEEVQEGHKKVNVKANLAEKDSNVAWQSEEVNGGTLDNKAS
TQNGNMTRVAERNGCIFDQELGEIEKVESGERKSYLSPTEDVKESIAEVPNAETMCEFNA
ARHVSVVPSSTSPATAVVEPTLESDDQNNTPSETVARHTQCAGTEDEEDKNDSELDTEQL
LKSFKATKRKSFLLGGPNVKRSRGLDRENLQGAEAEENHRVCSGVESTKNPLYTKVPEIT
NQEALRDNENSSWSDFISPSNSPAQTRKPVTEKPDQVAIEDSIPDGSCSGQDSAGANCVS
RNSVSSALTPNKVSKRVIESPHLSVVPQVLDSGLCFTAVEHEELNEPSKYSQMTETQLDN
KIRDNMLVPNSAASGPHSVNSAKHFFNADSSLTPDGLGIPIVQIVPEAKSYSNGSGEMSS
HSSIKTVLRKRTRARRLESSYESDCSEEGLPTLTEIFGTSTHPPAVTKDQGDSSEANRCE
GATAGGAQQLSRPPACPSPDCVDSSQGSVDLFGTPDECNVPVNDISVSTQIESSQFSSEV
LVTQQKIEMQKELVRLEKLMALVSEVLQEKEDSPAKEVPSETNQSRQTTDADAQRLPCDQ
DTGQRSDQETAEEVEREPGTRPSKHDSVAEMAVQSSTHTVKGTEASSSASKILKNSASPS
DGQEDKENNTPPRDRSKAKMVLVTSGLDPNEQIMVKRFAKQVGARVVSKVTPEMTHIIMH
TDEQLVCERTLKYFLGIASRKWVVSFQWISECFRQKKLLDESVFEVRGDVVNGPNHQGPM
RARTSEDNNLLMKGYKICFQGPFTDMTTDEMEWMVELCGAAVVRDPLLLDSKQISHQLVI
VQSGSESSSTYSSLSKQATVVTRGWLLDTVATYTLQNYNTYTT
NT seq 4272 nt   +upstreamnt  +downstreamnt
atgacaactccaacgaccacagatgtcagaaagggcatttcagtcctttgggagacgctg
cagtgtcccatatgcttggatttaatgaccgcacctgtttctactaagtgtgaccatcag
ttttgcaaattttgtatgatgaaacttttggacagcaccaaacaaaacagggctgactgt
ccagtgtgtaaaaccaaaataaccaaaaggagcttgcaggagagtcctgggtttcagcga
cttgtagcaggattgcaggatatgatccaggcatatgaacaagacactggcatcaactac
ttcactggaatgtccgagcagaaaggacaactgggggtcacagatgctgaagctactaaa
cattgtcccgataagtcattcggagatacacctgacaatgtggaaaatgacgacaatgat
gatccttcaaggtctcactcctcgactctagcagcccagaatggatttgcaagactgatg
ggacttgaagacacaagtccaatgacgacagaaaatgacggcctggacagtgggcttggt
gaggccccaccaacttctgacaagaaaatgcacagtcctacagataatatggaaccagtg
gaaacagaaatgtcagaagttgtggaaacgtcaacacacaaaactagaggcaaaaagaga
ttcctcaaattggagaaagcctcccatcctacatcattaattccagacgagtccgaaaac
aaacctttaagaaagtcctcaagaaagaaacagaaaaaggatttggtgcctgataagatt
ctagaggaaaaacagaagaagagtcgagagaaagtcgctgagtggctcatgaaagttcca
actgaaggaagtctcgagttagagaaactcaacgaagacaccgacgattctgacagctgt
tcctccgcttcaacaatagatataaaaaaacacaacagtgatatgaatcttaagagaggg
gaacgtgctaaagcccttgaagaacaggtgtttggtgccgtctacaaacgagagagaaga
gggaacaggaccatctctcctccactaaatgtttttatcgaaacaccaacaaccaaagaa
agacaaaatgtttccaaaacaaagaagaagaacactgtcactcctgctgattttgtcaag
aaaacaagctctgaagatgaaagtaaaagccatatggaggaagagcaacaaaggatggaa
gaagtaaataacaccagcagtgacattgtcacaaaagcaaaacagatggaggttatggag
gaaaatgataaagacaacatgccagaaagtgacaaaattgatgacaacgaagaggctccc
tgtcctgcgtctgatattgaaaaacagctaccagacagaaagtcagatagaaggacacgt
aatgctatgcagcaggtcgacagtgattttcaagagcaagctgaggcaaagtctgaaagc
gctgagcaaaacaaaactgagaagaggaaaaataaaaacctgaggtcagtaaaaggcaag
cctgctagagtgccaaaaccccttgttctggttggagttaaaaatggagaaaccagtcct
aaggctagaccaaggtcagaagaagttcaagttcatattgagaattacccgagcagcgaa
gaccgagaaatccctatcatgagaaacaccaggagaagtagaagacttcaactcttcgct
gaggaagtccaagagggtcacaagaaagtaaacgtgaaagccaatttagctgaaaaagac
agcaatgttgcatggcaatctgaggaagttaatggtggaacattggacaataaggcatca
actcagaatggaaacatgacacgggtggctgaaagaaacggatgtatttttgatcaagag
ttaggagaaatagaaaaggtggagtcgggtgagagaaaatcttatttgagcccaacagaa
gatgttaaagagtccatcgctgaagtgccaaatgctgaaacgatgtgtgaatttaatgct
gcacgtcatgtctctgtggtcccaagctccacgagtccagctacagctgtggtcgagccg
acgctagaaagtgacgaccaaaacaatacgccatcggaaaccgtcgctcgccacacacaa
tgtgctggaactgaagatgaggaggataagaatgatagcgaactggacacagagcaactg
ctcaagagcttcaaagccactaaaagaaaatccttccttcttggcggtccaaatgtgaaa
agaagccgtggtttagaccgagaaaacctgcagggtgccgaagcagaggaaaaccatcga
gtttgttctggtgttgaatctacaaaaaatccattatacacaaaggtgcctgaaatcacc
aaccaagaggcattaagagacaatgaaaactcatcttggagtgattttatctccccttct
aactcacccgcccaaacaagaaagccagttactgagaaaccagatcaagtggcgatagaa
gactcaatccctgatggcagttgttcaggtcaagacagcgctggtgctaactgtgtctct
aggaatagtgtcagtagtgccctcactcctaataaagtgtcaaagcgtgttattgaaagt
cctcatctttctgttgtgcctcaagtgttagattctggcctctgcttcacagccgttgaa
cacgaggagctgaatgaaccctcaaagtattctcaaatgacagagactcagctggacaac
aaaataagagacaacatgttggtgcccaattcagctgctagtggaccacattcagtcaac
agcgcgaaacattttttcaacgcagattcgtctttaacccccgatggccttggaatacca
attgtgcaaattgtcccagaggcaaagtcgtacagcaatggcagcggagagatgagctcc
cattcgtccatcaagaccgtgctgaggaagaggacaagggcaaggaggctagagtcttca
tatgagtcagactgcagtgaagagggattaccaactttgacagagattttcgggacatcc
actcatcctcctgctgtgacgaaggatcagggagactccagtgaagctaatagatgtgag
ggggccacagctggtggagcacagcagttgagccgtccacctgcgtgcccgagccccgac
tgtgttgattccagccaagggtctgtagacttgtttggcacgccggatgaatgtaatgtc
ccagtgaatgacatcagcgtttccacacaaatcgaatcatcacaattttcaagcgaagtc
cttgttacacagcaaaagatagaaatgcagaaggagctggtgaggttggagaagttgatg
gctctggtgtccgaggtgcttcaggagaaagaagacagtcctgctaaagaagtcccctca
gaaacaaatcagagcagacaaaccacagacgcagacgctcaaagactcccgtgtgaccag
gacacaggtcaaaggtcagaccaagaaactgctgaagaagtagagcgagagcccggcaca
agaccgtcaaagcatgacagcgtagcagagatggcagtgcagagctccacacacacagta
aaaggcaccgaagcctcaagttcagcttccaaaatattaaaaaacagcgcttcaccatca
gatgggcaggaagacaaagaaaataacactcctccaagagataggagtaaagctaaaatg
gtgctagtgacgtctggattagaccccaatgaacagataatggtcaaaaggtttgccaag
caagttggggcccgtgtggtttctaaggtaaccccagagatgacccatatcataatgcac
acagatgaacaactggtatgtgagcgcacactgaagtacttccttggcatcgcaagcagg
aagtgggtggtgagcttccagtggatttcagagtgcttcagacaaaagaaactcctagat
gagagtgtctttgaagtgagaggtgacgtggtgaatggacctaaccaccagggccccatg
agagctcgcaccagtgaagacaataacttgctcatgaagggctacaagatctgcttccag
gggccttttacagacatgacaacagatgaaatggagtggatggtggagctctgtggagca
gctgtagtcagagatccacttctcctcgacagtaaacagatctcccatcagcttgtcatt
gtacagtctggatcagagtcgtcctccacatacagcagtctctctaaacaagctacagtc
gtgacacgtggttggctgttggataccgtggcaacctacaccctccaaaactacaacacg
tacactacatga

DBGET integrated database retrieval system