Anoplopoma fimbria (sablefish): 129097931
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Entry
129097931 CDS
T09102
Symbol
ldlra
Name
(RefSeq) low density lipoprotein receptor a
KO
K12473
low-density lipoprotein receptor
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03272
Virion - Hepatitis viruses
afb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
129097931 (ldlra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129097931 (ldlra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129097931 (ldlra)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
129097931 (ldlra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
DUF5050
EGF_3
hEGF
Psg1
Vgb_lyase
Motif
Other DBs
NCBI-GeneID:
129097931
NCBI-ProteinID:
XP_054462807
LinkDB
All DBs
Position
11:22310115..22322023
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AA seq
929 aa
AA seq
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MGQPCHSPMLMFLLCSVVQTNAWATCGSKQFQCGNGKCITVRWVCDGTDDCGDGTDELPG
TCMAKTCRPTEFSCGDRLNQCIPSTWRCDGKADCENGADEESCAPKRCTSGEFRCGNGQC
VSTSFVCDDEADCDDRSDEASCPPITCSGKSFQCNNSICLPRLWACDGDADCSDGSDEWP
QNCGTTAPDSAPAHQCSSLEFRCSNGECIHSSWKCDGGADCVDRSDEADCARSTCRPDEF
ECGDGTCIHGSHQCNHQYDCRDMSDEMGCVNATHCDGPSRFKCRSGECISMEKVCDMKRD
CRDWSDEPLRDCGSNECQYNNGGCSHICNDLKIGFECLCPAGYHLVENKRCEDIDECANP
DTCSQICINQIGSYKCQCEDGYQVDPATKACKAIGTIAYLFFTNRHEVRKMTLDKSEYTR
VIPRLKNVVALDMNMVAKEIYWSDISQKKIYRAPVDSAEDPAHHSVVIGSDIDAPEGIAF
DWIHGNLYWTDSIRGTVSVVTSEGGRRKTLFHQNLSKPRAIVVDPHSNFIYWTDWGNPAK
IEKAGLNGGDRTALVTDNIVWPNGITIDLLNQRLYWVDSKLHTLSSIDTQGGGRRTIIID
EHKLAHPLSLTVFEERVFWTDVSNSAIFSANRLTGDDITPVAEHLSSPEDIILYHNLKQP
TGRDWCQVSSCEFLCLAAPQVGRHPPKYTCVCPDNMMLARDMRTCVPAVPTPTAPVQPQV
PETDPPPQPPQPSSTTSKPQVHTTPKPQVHTTPKPQVHTTPKPQVRTTPKHQVRTTTAPI
IITSTAARPVPRSTKPTVRTTTPEPRTPPTQPANPKIPKTTTGAPVTSPDFSHGFAAAIP
NAASPAPMALYIALPLAIVCLVAVGGVLLWRNYRLKNTNTIHFDNPVYQKTTEDQVHIWR
SHSPDGYSYPKRQVVSLDEEADNPAFMEN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgggacagccttgtcactcaccaatgttgatgtttctcctctgctccgttgttcagaca
aacgcatgggcaacatgtggatccaagcagttccagtgtgggaacgggaaatgcatcacg
gtcagatgggtgtgcgatggcacggacgattgcggagacggcactgatgaacttcctggt
acctgcatggccaaaacgtgtaggccgacagagttcagctgcggggaccgcctgaaccag
tgcataccgagcacctggcgctgtgatggaaaagctgactgtgagaacggagctgatgaa
gagagctgtgcgccgaagaggtgcacaagcggagagttccgctgcgggaatggccagtgt
gtgtcgacttcctttgtgtgcgacgacgaggcggactgcgacgaccgcagcgacgaggcc
tcctgcccgcccatcacctgcagtggtaagtccttccagtgcaacaactccatctgccta
ccccgcctgtgggcctgcgacggcgatgctgactgctccgacggctcagatgagtggccc
cagaactgcggcacgacggcgcccgactctgctcctgcacaccagtgctcatccctggag
ttccgctgctctaatggggagtgcatccacagcagctggaagtgcgatgggggagccgac
tgcgtcgatcgatcggacgaagcagactgtgcacgttccacctgccgtcccgatgagttt
gaatgcggcgatggcacctgcatccacggcagccaccagtgcaaccatcagtacgactgc
agggacatgagtgacgaaatgggctgcgtcaatgcgacccattgtgatggaccaagcagg
ttcaagtgccgcagtggggaatgcataagcatggagaaggtgtgtgacatgaagcgtgat
tgcagggattggtcagatgagcctcttagggattgtggctccaacgagtgccagtacaac
aacggcggctgctctcatatttgcaatgacctgaagatcggcttcgagtgcctgtgtccc
gctgggtatcacctggttgagaataagcgctgtgaagatattgacgagtgtgccaaccca
gacacctgcagccagatctgcatcaaccagatcggcagttacaaatgccagtgcgaggac
ggttaccaagtcgacccagcaaccaaagcctgcaaggccatcggtacaatagcttacctt
ttcttcaccaaccgccatgaagtcagaaagatgactttggacaaaagtgagtacaccaga
gtaataccccgtctaaagaacgttgtggctctcgacatgaacatggtcgccaaggagatc
tactggtcggacatctcccagaagaagatctacagagctccggtggactcggccgaagac
cccgctcatcacagcgtggtgatcggcagtgacattgatgctcctgaaggcatcgctttt
gactggatccacggtaacctgtactggactgacagcattcgcggcaccgtctccgtggta
acttctgagggtgggcgccgcaagactctcttccaccagaacctatctaaacctcgcgct
attgtggttgacccccacagcaactttatttactggactgactgggggaatcctgctaag
attgagaaggcgggtcttaatggaggagaccgcaccgctctggtcactgacaacattgtg
tggcctaatggaattacaattgacctgttgaaccagcggctctactgggtggactctaag
ctgcacaccctctctagtatcgacacacagggcggtggtcgacgcaccatcatcattgat
gaacacaagctggctcacccgctgagcctcactgtgtttgaggagagagtgttctggaca
gacgtcagtaacagtgccatcttcagtgcaaacaggctgacgggtgatgacatcacacca
gtggcagagcacctatcatctccggaagacattattctctaccataacctcaaacaaccc
actgggagggactggtgccaggtatccagctgtgaattcttgtgcctggcagctcctcaa
gtgggcagacatccccccaaatacacctgtgtctgtccagataacatgatgttggccagg
gatatgaggacatgtgtacctgctgtgccaacacctacagctcctgtgcagcctcaagtg
ccagagaccgacccccctcctcagccaccacagccatccagcaccacatctaagccccag
gtccacaccacacctaagccccaggtccacaccacacctaagccccaggtccacaccaca
cctaagccccaggtccgcaccacaccaaagcaccaggtccgcaccaccacagcgcccatc
ataatcaccagcaccgcggccaggccagtaccacgcagcaccaagcctactgtgaggacc
accacacctgaaccaaggaccccgccaacccagccggcgaaccctaaaatacccaagacc
accacaggggctccagtcacctctccagatttcagtcatgggtttgctgcagctataccc
aacgccgcctcccccgccccgatggctttgtatattgcattacctctggcgatcgtttgc
ctggtggctgttggtggtgtgctgctgtggaggaactacaggctgaaaaacaccaacacc
attcactttgacaacccagtgtatcagaaaaccaccgaggaccaagtgcacatttggagg
agccacagccccgatggttactcctacccaaaaagacaagttgtgagcttggatgaagaa
gcagacaatccagccttcatggaaaactga
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