KEGG   Anoplopoma fimbria (sablefish): 129098657
Entry
129098657         CDS       T09102                                 
Symbol
rbx1
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03420  Nucleotide excision repair
afb04110  Cell cycle
afb04114  Oocyte meiosis
afb04120  Ubiquitin mediated proteolysis
afb04141  Protein processing in endoplasmic reticulum
afb04310  Wnt signaling pathway
afb04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    129098657 (rbx1)
   04120 Ubiquitin mediated proteolysis
    129098657 (rbx1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    129098657 (rbx1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    129098657 (rbx1)
   04350 TGF-beta signaling pathway
    129098657 (rbx1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    129098657 (rbx1)
   04114 Oocyte meiosis
    129098657 (rbx1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:afb04121]
    129098657 (rbx1)
   03400 DNA repair and recombination proteins [BR:afb03400]
    129098657 (rbx1)
Enzymes [BR:afb01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     129098657 (rbx1)
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   129098657 (rbx1)
  Multi subunit type E3
   SCF complex
    Ring finger protein
     129098657 (rbx1)
   Cul2 complex
     129098657 (rbx1)
   Cul3 complex
     129098657 (rbx1)
   Cul4 complex
     129098657 (rbx1)
   Cul7 complex
     129098657 (rbx1)
   Cul8 complex
     129098657 (rbx1)
   Cul9 complex
     129098657 (rbx1)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      129098657 (rbx1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      129098657 (rbx1)
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 zf-RING_16
Other DBs
NCBI-GeneID: 129098657
NCBI-ProteinID: XP_054463702
LinkDB
Position
11:23639398..23642153
AA seq 108 aa
MAAAMDVDTPSGANSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggcagcagcgatggatgttgatacgccgagcggcgctaacagcggagctagcaagaag
cggtttgaagtgaagaagtggaatgctgtcgcgctgtgggcctgggacatcgtggtggat
aactgtgccatctgtcggaaccacatcatggatctctgtatagagtgccaggccaaccaa
gcttctgccacctctgaggagtgcaccgtagcctggggtgtctgcaatcatgcattccac
ttccactgtatttcccgctggctgaaaaccagacaggtgtgcccactggacaacagggag
tgggagtttcagaaatatggacactag

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