Anoplopoma fimbria (sablefish): 129101016 Help Entry 129101016         CDS       T09102                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism afb  Anoplopoma fimbria (sablefish) Pathway afb04010   MAPK signaling pathway afb04120   Ubiquitin mediated proteolysis afb04140   Autophagy - animal afb04144   Endocytosis afb04517   IgSF CAM signaling afb04620   Toll-like receptor signaling pathway afb04621   NOD-like receptor signaling pathway afb04622   RIG-I-like receptor signaling pathway afb05132   Salmonella infection afb05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:afb00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     129101016 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     129101016 (traf6)   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     129101016 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     129101016 (traf6)    04140 Autophagy - animal     129101016 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     129101016 (traf6)    04621 NOD-like receptor signaling pathway     129101016 (traf6)    04622 RIG-I-like receptor signaling pathway     129101016 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     129101016 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     129101016 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:afb04131]     129101016 (traf6)    04121 Ubiquitin system [BR:afb04121]     129101016 (traf6) Enzymes [BR:afb01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      129101016 (traf6) Membrane trafficking [BR:afb04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     129101016 (traf6) Ubiquitin system [BR:afb04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     129101016 (traf6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 TRAF6_Z2 zf-C3HC4_4 zf-RING_5 RING_XB3-XBAT31 CEP104_ZnF TRAF3_RING zf-RING_11 U-box DM zf-TRAF_2 Prok-RING_4 ATG16 DUF7403 Motif Other DBs NCBI-GeneID:  129101016 NCBI-ProteinID:  XP_054466575 LinkDB All DBs Position 2:complement(5261209..5268933) Genome browser AA seq 581 aa AA seqDB search MASFESNKGSLQEDSYEGAVGGDLSICQLAMLEMERESLLSPSEGPGTFISSNSTSLQAA DPLQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDAGQRCPVDNE RLLEDQLFPDNFAKREILSLTVRCPNSGCANKMELRHLENHLARCQFATVPCPQCQQSVR KSHLEEHKTEECQKRSKSCQDCLATFYYEERELHEQQCPFASVKCQYCEMDLIRDQIESH CDTDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSL WTLGPSVSPEDQGAAAASVSAACSAPRGAPCSGSGGSSSSSTSTNCAPSQSSEEIQRLRE MDGRLVRQDHQLRELIILKETQAGQLAELRRRVSMLEETVKDLESQQCHGIFIWRLRGFS AHLRNQDAGLPVVEHSPGFYTGCPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGAFDGQ LSWPFQGTIRLAILDQGPEAQHHTEVMETKPDLQAFQKPVIQRNPKGFGYVTFLHLHQLS QRAFVKDDTLLIRCEVTPRFDNTLHREGPAVQPRGPEVSRD NT seq 1746 nt NT seq  +upstreamnt  +downstreamnt atggcctcctttgaaagcaataaggggagtttgcaggaggacagctatgaaggagccgtc ggtggagatctgtccatctgccagttggcgatgctggagatggagcgggaatccctcctc agcccgtcagagggccccggcaccttcatcagcagcaactccaccagccttcaggccgct gacccgctccagggctacgatgtggagtttgacccccccctagagagtaaatacgagtgc cctatctgcctcatggctttgaggaatgccattcaaacaccctgtggtcaccgtttctgc aagaactgcatcgagaagtctattcgtgatgcaggccagaggtgccccgtggacaacgag aggctgttagaagaccagttgtttcccgacaactttgccaaacgtgagattctatcgcta accgttcgctgcccgaactccggctgtgccaacaaaatggagctccggcatttagagaac catttggcgcggtgtcagtttgccaccgtgccttgcccacagtgccagcagtctgtgaga aagagccacctcgaggagcacaaaactgaggagtgccaaaagagatccaagtcctgtcaa gattgtttggcaaccttttactatgaggagagagagcttcatgagcagcagtgtcccttc gccagcgtgaagtgccagtactgcgagatggatctcatcagagaccagattgaatctcat tgtgacacagattgtccgaaagcacccatcgcctgtaacttcagcacctttggttgtaag gaaaggatgcagcgccacaacctggctcagcacatgcaggagttcacgcagatgcacatg cgctacatggccgagttcctgcgcggccttagcctcaacggcaccacgcccaagtccctg tggacgctaggaccttcggtttcccccgaggatcaaggcgctgctgcggcatcagtatca gcagcctgtagtgcgcccagaggagctccgtgcagcggcagcggcggcagcagcagcagc agcaccagcactaactgtgctccaagtcagtccagtgaggagatccagaggctgagggag atggacggacggttggtgaggcaggatcaccagctgcgcgagctcatcatcctaaaagaa acacaggccggccagcttgcagagctcaggcgtcgagtgtccatgctggaggagaccgtg aaggacctggagtcccagcagtgtcacggcatcttcatctggcgcctccgaggtttctcc gcccacctgcggaaccaggatgcgggcctgccggtggtggagcacagccccggcttctac acgggctgcccgggctacaagctgtgcctgcgcctacacctgcagacccccaacgccccg cgctgctccaacttcatctccctcttcgtgcacaccatgcagggagctttcgacgggcag ctgagctggccgttccagggcaccatccgcctggccatcctggaccagggccccgaggct cagcaccacaccgaggtgatggagaccaaaccggacctgcaagccttccagaagcccgtc atccagcgcaaccccaaaggattcggctacgtcacctttctgcacctgcatcagctgagt cagagagccttcgtgaaagatgacactctgctcatccgctgcgaggtgacgccacgcttt gacaatacgctccaccgcgaaggaccggccgtgcagcccagaggacccgaggtttcgagg gactaa

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