Anoplopoma fimbria (sablefish): 129103143 Help Entry 129103143         CDS       T09102                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism afb  Anoplopoma fimbria (sablefish) Pathway afb04115   p53 signaling pathway afb04145   Phagosome afb04148   Efferocytosis afb04350   TGF-beta signaling pathway afb04510   Focal adhesion afb04512   ECM-receptor interaction afb04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:afb00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     129103143   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     129103143  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     129103143    04148 Efferocytosis     129103143   09143 Cell growth and death    04115 p53 signaling pathway     129103143   09144 Cellular community - eukaryotes    04510 Focal adhesion     129103143   09142 Cell motility    04820 Cytoskeleton in muscle cells     129103143  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:afb04131]     129103143   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:afb00536]     129103143 Membrane trafficking [BR:afb04131]  Endocytosis   Phagocytosis    Opsonins     129103143 Glycosaminoglycan binding proteins [BR:afb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129103143 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF_CA EGF cEGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  129103143 NCBI-ProteinID:  XP_054469420 LinkDB All DBs Position 15:19385609..19394410 Genome browser AA seq 1170 aa AA seqDB search MMLWGIFLLLMLWSCEGARLAESRDDNSVYDLFDMVRINKRNKGLSLVKGADPNSPAYKV LDADLIPPLPDSSLRDLLDSIQAERGFLLLVNLKQFKKTRGSLLTIEKNDGSGPVFQIIS NGKANTLDVVYSTMNQQQVVSIEDADLATGHWKNITLFVQDDRVQLFVGCEEINVSEMDL PISKVLTQEVADVARLRIGKGSVRDKFMGVLQNVRFVFGTSLDAILRNKGCQSGATLTDV MTLDNPVNGSSPAIRTDYTGHKAKDLQSVCGFSCEDIAGMFKELKGLGVVVKQLSNELRK VSADSTLLKNQMNIHNGICIHNGIVHKDQDEWTVDSCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTHYAEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQT RDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGEGRQ TKICQQSPCPIDGGWGPWSPWDTCTVTCAGGVQTRKRLCSDPVPKYGGKDCVGDASVSQV CNKQECPIDGCLSSPCFTGAKCTSFPDGSFRCGRCPLGYTGNGIACKDIDECKAVPDACH THNGVHRCENTEPGYNCLPCPTRFSGPQPFGRGVEQATAKKQVCKPRNPCQDGTQDCHKN ANCIYLGVFSESMFRCECKPGYAGNGRICGEDSDLDGWPNTNLRCVENATYHCKKDNCPN LPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDIGDRCDNCVFE ANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPLEH NPDQFDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN DGIPDEKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDNVLDIHDVCPENFAISETDFRRF QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFVNTDRDD DYAGFVFGYQSSSRFYTVMWKQITQTYWSVTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL WHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNIYD TTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtggggcatctttttgctgttgatgctttggagctgtgaaggagccagattg gcagagagtcgggacgacaacagtgtgtatgacttattcgatatggtccggataaacaag agaaacaaaggactgagtttggtcaaaggtgcagatcccaacagccccgcatacaaagtc ctcgacgcagacctgatccccccactgcccgacagctccctcagggacctcctcgactcc atccaggctgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccagg ggcagccttttgaccatcgagaagaacgacggatccggacccgttttccagatcatctcc aacgggaaggcgaacactctggatgtggtctactccaccatgaaccagcagcaggtcgtg tccatcgaggatgctgatttggccaccggacactggaagaacatcacgctgttcgttcag gatgaccgggtgcagctttttgttggctgtgaggagatcaatgtatcagagatggatttg ccaatctccaaagtgctgacccaggaggtggcagacgttgcccggctcaggattggaaag ggatctgtacgggacaaattcatgggagtgcttcaaaatgtgcgctttgtctttgggacc tctctcgatgctatactaagaaataagggatgccaaagtggagctaccttaactgatgtc atgaccctggacaacccagtcaacggctccagccccgccattaggactgattacaccggc cacaaagccaaagatctgcagtctgtctgcggtttctcttgtgaggacatcgccggcatg tttaaggagcttaagggactcggcgtcgtcgttaaacagctgtcgaatgagctccgcaaa gtgtctgcggacagcacactgctgaaaaatcaaatgaacatccacaatggaatttgcatc cacaacggcatcgtgcacaaggaccaagatgaatggaccgtggatagctgcaccgagtgc acctgccagaattctgctaccgtgtgtcgcaaaatctcctgccctctgatcccatgtgct aatgccaccgtgccagacggagagtgctgccctcgctgtggaacacactatgcagaggat ggttggtctccctggtctgactggacccattgttcggtgacttgtggtcggggcatccag cagcgcggacgttcctgcgaccgcatcaacagcaactgtgagggcacctctgtccagacc cgtgactgctacccccaggaatgtgacaaacgcttcaaacaggacggcggttggagccac tggtctccatggtcttcgtgctctgtgacctgtggtgagggcgtcatcacccggatacgc ctctgcaactcccccacaccgcagatgggtggcagggactgccagggagagggacgtcaa acgaaaatctgccaacagtcaccctgtcctatcgatggagggtggggaccttggtcacca tgggacacctgcactgttacctgtgctggaggagtccagacccgcaaacgcctctgctct gaccctgtccccaaatatggaggaaaggactgtgttggtgatgcttctgtgtctcaagtg tgcaacaaacaggagtgccccattgacggttgtctctccagcccatgcttcactggagca aagtgcaccagcttccccgatggctctttcaggtgtggcaggtgtccacttggctacact gggaatggcatcgcctgcaaagacattgatgaatgtaaagcggtccccgatgcttgccac acacataacggagtgcatcgctgtgagaacactgagcccggttacaactgtctaccctgc cctacacgtttctccggtcctcagccctttggaagaggagtggagcaggcgaccgctaaa aaacaggtttgcaaaccccgtaacccttgccaagatgggacccaggactgccataagaat gcaaactgcatctacttgggcgtcttctctgagtccatgttccgctgcgagtgcaaacca gggtatgctgggaatggccgtatttgcggagaggacagcgacctggacggatggcccaac accaacctgcgttgtgtggagaacgccacctaccactgcaagaaggataactgccccaac cttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgtgaccac gatgatgacaatgatgggatccccgatgatagggacaactgcccaagagtgtacaaccct gcccagtatgacgcagacagagatgacattggcgaccgctgtgacaactgtgtgttcgag gccaatacagaccaaacggacactgacaacaatggcgagggtgatgcctgtgctgttgac attgatggtgatggcattctgaacgagaacgacaactgcccatatgtttacaacgtggac cagagagatactgacagggacggggtgggagatcattgtgacaactgccctctggagcac aaccccgatcagttcgactctgactcagatcgcataggagacaagtgcgacaacaaccag gacattgacgaggacggacaccagaacaacttggacaactgcccctacatacccaacgcc aaccaggccgaccacgacaaggatggcaagggtgacgcctgcgaccatgacgacgacaac gacggcattcccgatgaaaaggacaactgtaggctggcatttaaccctgatcagctggac tctgatggcaatggccgtggtgatgtgtgtaaagacgattttgaccaagacaatgttctg gacatccacgacgtgtgcccggagaactttgccatcagtgaaacagacttccgcagattc caaatggttcctctggaccccaagggcacctcccagattgaccccaactgggtggtccgg catcagggcaaggagttggtgcagactgtcaactgcgatcccggcattgctgttggtttc gatgagttcagcgcggtggacttcagcggaacgttcttcgtcaacacggacagagatgac gactacgctggtttcgtatttggctaccagtccagctcacgcttctacacagtgatgtgg aaacagatcacacagacttactggtccgtcacacccacaaaagctcaaggctactcaggc ctgtcaatcaaagtggtaaactccaccactgggcccggtgagcatctgaggaacgccctg tggcacaccggagacaccgcaggacaggtgcgcactctgtggcacgaccccaagaacatt ggctggaaggacttcactgcctacagatggcatctgacccacagacccaagactggactt attagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaacatctacgac acgacgtacgctggtgggcggctaggcttgtacgtcttctctcaggagatggtttacttc tcagatctcaaatacgaatgcagagacacataa

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