Anoplopoma fimbria (sablefish): 129103143 Help Entry 129103143         CDS       T09102                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism afb  Anoplopoma fimbria (sablefish) Pathway afb04115   p53 signaling pathway afb04145   Phagocytosis afb04148   Efferocytosis afb04350   TGF-beta signaling pathway afb04510   Focal adhesion afb04512   ECM-receptor interaction afb04518   Integrin signaling afb04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:afb00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     129103143   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     129103143    04518 Integrin signaling     129103143  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     129103143    04148 Efferocytosis     129103143   09143 Cell growth and death    04115 p53 signaling pathway     129103143   09144 Cellular community - eukaryotes    04510 Focal adhesion     129103143   09142 Cell motility    04820 Cytoskeleton in muscle cells     129103143  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:afb04131]     129103143   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:afb00536]     129103143 Membrane trafficking [BR:afb04131]  Endocytosis   Phagocytosis    Opsonins     129103143 Glycosaminoglycan binding proteins [BR:afb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129103143 SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 TSP1_ADAMTS EGF_CA EGF cEGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  129103143 NCBI-ProteinID:  XP_054469420 LinkDB All DBs Position 15:19385609..19394410 Genome browser AA seq 1170 aa AA seqDB search MMLWGIFLLLMLWSCEGARLAESRDDNSVYDLFDMVRINKRNKGLSLVKGADPNSPAYKV LDADLIPPLPDSSLRDLLDSIQAERGFLLLVNLKQFKKTRGSLLTIEKNDGSGPVFQIIS NGKANTLDVVYSTMNQQQVVSIEDADLATGHWKNITLFVQDDRVQLFVGCEEINVSEMDL PISKVLTQEVADVARLRIGKGSVRDKFMGVLQNVRFVFGTSLDAILRNKGCQSGATLTDV MTLDNPVNGSSPAIRTDYTGHKAKDLQSVCGFSCEDIAGMFKELKGLGVVVKQLSNELRK VSADSTLLKNQMNIHNGICIHNGIVHKDQDEWTVDSCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTHYAEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQT RDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGEGRQ TKICQQSPCPIDGGWGPWSPWDTCTVTCAGGVQTRKRLCSDPVPKYGGKDCVGDASVSQV CNKQECPIDGCLSSPCFTGAKCTSFPDGSFRCGRCPLGYTGNGIACKDIDECKAVPDACH THNGVHRCENTEPGYNCLPCPTRFSGPQPFGRGVEQATAKKQVCKPRNPCQDGTQDCHKN ANCIYLGVFSESMFRCECKPGYAGNGRICGEDSDLDGWPNTNLRCVENATYHCKKDNCPN LPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDIGDRCDNCVFE ANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPLEH NPDQFDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN DGIPDEKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDNVLDIHDVCPENFAISETDFRRF QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFVNTDRDD DYAGFVFGYQSSSRFYTVMWKQITQTYWSVTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL WHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNIYD TTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtggggcatctttttgctgttgatgctttggagctgtgaaggagccagattg gcagagagtcgggacgacaacagtgtgtatgacttattcgatatggtccggataaacaag agaaacaaaggactgagtttggtcaaaggtgcagatcccaacagccccgcatacaaagtc ctcgacgcagacctgatccccccactgcccgacagctccctcagggacctcctcgactcc atccaggctgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccagg ggcagccttttgaccatcgagaagaacgacggatccggacccgttttccagatcatctcc aacgggaaggcgaacactctggatgtggtctactccaccatgaaccagcagcaggtcgtg tccatcgaggatgctgatttggccaccggacactggaagaacatcacgctgttcgttcag gatgaccgggtgcagctttttgttggctgtgaggagatcaatgtatcagagatggatttg ccaatctccaaagtgctgacccaggaggtggcagacgttgcccggctcaggattggaaag ggatctgtacgggacaaattcatgggagtgcttcaaaatgtgcgctttgtctttgggacc tctctcgatgctatactaagaaataagggatgccaaagtggagctaccttaactgatgtc atgaccctggacaacccagtcaacggctccagccccgccattaggactgattacaccggc cacaaagccaaagatctgcagtctgtctgcggtttctcttgtgaggacatcgccggcatg tttaaggagcttaagggactcggcgtcgtcgttaaacagctgtcgaatgagctccgcaaa gtgtctgcggacagcacactgctgaaaaatcaaatgaacatccacaatggaatttgcatc cacaacggcatcgtgcacaaggaccaagatgaatggaccgtggatagctgcaccgagtgc acctgccagaattctgctaccgtgtgtcgcaaaatctcctgccctctgatcccatgtgct aatgccaccgtgccagacggagagtgctgccctcgctgtggaacacactatgcagaggat ggttggtctccctggtctgactggacccattgttcggtgacttgtggtcggggcatccag cagcgcggacgttcctgcgaccgcatcaacagcaactgtgagggcacctctgtccagacc cgtgactgctacccccaggaatgtgacaaacgcttcaaacaggacggcggttggagccac tggtctccatggtcttcgtgctctgtgacctgtggtgagggcgtcatcacccggatacgc ctctgcaactcccccacaccgcagatgggtggcagggactgccagggagagggacgtcaa acgaaaatctgccaacagtcaccctgtcctatcgatggagggtggggaccttggtcacca tgggacacctgcactgttacctgtgctggaggagtccagacccgcaaacgcctctgctct gaccctgtccccaaatatggaggaaaggactgtgttggtgatgcttctgtgtctcaagtg tgcaacaaacaggagtgccccattgacggttgtctctccagcccatgcttcactggagca aagtgcaccagcttccccgatggctctttcaggtgtggcaggtgtccacttggctacact gggaatggcatcgcctgcaaagacattgatgaatgtaaagcggtccccgatgcttgccac acacataacggagtgcatcgctgtgagaacactgagcccggttacaactgtctaccctgc cctacacgtttctccggtcctcagccctttggaagaggagtggagcaggcgaccgctaaa aaacaggtttgcaaaccccgtaacccttgccaagatgggacccaggactgccataagaat gcaaactgcatctacttgggcgtcttctctgagtccatgttccgctgcgagtgcaaacca gggtatgctgggaatggccgtatttgcggagaggacagcgacctggacggatggcccaac accaacctgcgttgtgtggagaacgccacctaccactgcaagaaggataactgccccaac cttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgtgaccac gatgatgacaatgatgggatccccgatgatagggacaactgcccaagagtgtacaaccct gcccagtatgacgcagacagagatgacattggcgaccgctgtgacaactgtgtgttcgag gccaatacagaccaaacggacactgacaacaatggcgagggtgatgcctgtgctgttgac attgatggtgatggcattctgaacgagaacgacaactgcccatatgtttacaacgtggac cagagagatactgacagggacggggtgggagatcattgtgacaactgccctctggagcac aaccccgatcagttcgactctgactcagatcgcataggagacaagtgcgacaacaaccag gacattgacgaggacggacaccagaacaacttggacaactgcccctacatacccaacgcc aaccaggccgaccacgacaaggatggcaagggtgacgcctgcgaccatgacgacgacaac gacggcattcccgatgaaaaggacaactgtaggctggcatttaaccctgatcagctggac tctgatggcaatggccgtggtgatgtgtgtaaagacgattttgaccaagacaatgttctg gacatccacgacgtgtgcccggagaactttgccatcagtgaaacagacttccgcagattc caaatggttcctctggaccccaagggcacctcccagattgaccccaactgggtggtccgg catcagggcaaggagttggtgcagactgtcaactgcgatcccggcattgctgttggtttc gatgagttcagcgcggtggacttcagcggaacgttcttcgtcaacacggacagagatgac gactacgctggtttcgtatttggctaccagtccagctcacgcttctacacagtgatgtgg aaacagatcacacagacttactggtccgtcacacccacaaaagctcaaggctactcaggc ctgtcaatcaaagtggtaaactccaccactgggcccggtgagcatctgaggaacgccctg tggcacaccggagacaccgcaggacaggtgcgcactctgtggcacgaccccaagaacatt ggctggaaggacttcactgcctacagatggcatctgacccacagacccaagactggactt attagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaacatctacgac acgacgtacgctggtgggcggctaggcttgtacgtcttctctcaggagatggtttacttc tcagatctcaaatacgaatgcagagacacataa

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