Anoplopoma fimbria (sablefish): 129105447
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Entry
129105447 CDS
T09102
Symbol
si:ch1073-335m2.2
Name
(RefSeq) LOW QUALITY PROTEIN: msx2-interacting protein
KO
K25100
Msx2-interacting protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
129105447 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129105447 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
129105447 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
129105447
NCBI-ProteinID:
XP_054472451
LinkDB
All DBs
Position
17:15645220..15663160
Genome browser
AA seq
3254 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEETSPSSSRDVTGFSRGTVGPVFGPPVSL
HTREGRYERRIDGSSESRERAYDHSPYGHHERSGTFDRPRHYNADYYRDRSMFAAAGPGS
SAIAGTFEASDPHFDSRIRDPFTLTNSTRRDLYRDDRGRRVDRTYHHRRSRSSHSSQSRH
PSPQRTTGQTPKTPHSPKRAPLSPGRGPRSRSHSRSSSSDSVSSTSSTGSGSDSNSSSSD
GSRAHSAQSSATHAPTQSSMGLDSDEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKHGK
VTSVQIHGASEDRYGLVFFRQQEDQEKALTVSKGKLFFGMLIEVTAWNGPETESENEFRP
LDGRIDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYS
DIASVCKAIKKMDGEYLGSNRLKLGFGKSMPTTCVWLDGLATSVTEQYLTRHFCRYGHVV
KVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRSMQTSGQ
DIRDFYEIPAERREERRPPYHEFTAERAYYENIRTPGIYPEEARRDYAARSRDRFPELEH
YQGEHFDPRYHEDPRDYRDYRDPFEQDIRKYTYIQRERERERERFEADRTRWSPSHPRRP
VTPTVSPSPSDRAPRDSERRVYSQSSERSGSVSSMSPPHFDKSDKTLLELAAKTDKSSQP
ERVAGAEKTKRAKRKEKGDKDKAEKVKSRKAKAQSPSNPLPETELETGCDGGSGRGRGSD
QDSHERQKSKGDGESLTGNPSSTAHHDSVKSERSEMSKGENSDVDGKNRVKKHLKPDIGN
DGKDSSVDSDRLAARKRRFADSGGRTIRQKRSRHEEEDVIPSSDFGASGTYLKELDTDKN
KDSQRRDSRLKADKSGTQKDGQEDLRGQREKSEGSLDPLESKRHPGHTSSRRFSHEGITD
QSSIREQEHHAAFKFALNADPDKSVKSKEDHVDIDLSQSYRKQMEQNRRLHQQQQQRDSD
KSDKPGSPHGSETEDLEHRSLVHEVGKPPEDVTDNFPSHKLKKVDQFEPDSGIKRERVYR
SFRQKSEDPDWNNMSSPGHQHFSLHADEDFVEPSQKELSRHEEKIHPDLELLVKRTHNTQ
ANKPNTPLLSVEEEQQKRWESRVKQDVLPDLNFSRSLSKNIHNRKRLEYGMWHDLEPGEV
RSDSEEDRENKPHSPMPSTSVPFAERPRVDRFSDPKLAHLERNKFYSFALDQTITPDTKA
LLERAKSLSSSREDNWSFLDYDSHFAGLRSRKDTEKVESAPRPTPSWYMKKKKSRIGAED
KLDDRKEEPKPEEHERRELFASRFLHSPVFELDSRRLQHLERKHEEPEHTQNQQPGQQGT
VDGELDSGPVVLFHSRFLELTRLQQQKNKTHQLQEAKVDPVPTGEIKVEKAPVQEQPALQ
SPETMESIMEPEIKPISPAEELISEPRLIPTPVTQFVVKDFPPPEEKCVVLTPAPDLYTP
VSVTKEEEKEEVKENEPVVPMQHPLTEAPTDSEPAQIAAPEPSYLVDKCKPSPSEGKLDI
TEDVKPFCPEKPGRRDSHDEFVSISEAELDPETTQPEVPEATSPIPPSLLEEEKETHIVW
KAVAEPEVERKLQVSKVQMPIDTDTNDEPASPQKEHKTKEMKNKKGKQSPAQVSPVPAMS
TSSSEKQATRKSERIDKEKLKRGSSPRAESKSTGKSPIHGSEPDMSEPGISAGRARRRNV
KSVYATPVEDDAPVHSGKETESPRSARKRGTDKDATLQQNIEQDPPAPIPIVKRGRPPKN
RRRGEESSTVKVEKSKMDNKDTDSNESEGGERIPRVSKGKSSPHGTKCSLNPMQTVLGSG
STRKGKKLRXADDQEMDFTDEDSMALQDSSSSCKEEPTIKVDQKKEEKDKQGRELGRDKI
VFHEKACEGKSNGKETDSPVLEEKPTLEKDRIVRGKTKLTRTPKSPILKNLKIRLNVTEV
KDLLQLGDDEQEDSSKKSKPGEQSDHVSKCTNANKGGSTNEEKEDANLEKKELLESPKSL
ISQELELEQALRNIAKLTDPGFPTEPPVPPVPPTEVKSDPEEEKPYPASETELMAAIDSI
TAEDGTVSLPPAAPAAPAAPSSAGVGSEPEIQDSILPAKENESETNIPALQEEPVFPATP
KKGRPKRKGQKQVRKDSKEGPSMCEELTTPSADSPPSSVKTVPATTPSAATTAVITSTTW
KPEPEPLAVKVSDVVAESESSSGEQIQHLKSVNPQSKSQICPKPQQVSPDCISPSLSPLA
NRPNIRPIQTSRIPVSPPDWRHQSKDTGVSSSSPMPLVFKENQPFPSDPENMDIDHGTSD
LRQILMKHKNISLPGSSSIPSNLPTLRDQNPSEGNTPSAVVPNKSPLSGSGMAAHPAPPI
ARAPASLPSPETKSVISVIASTATSVISRVCNPPEPEDKVNMNIGNPCVDMTLPKPAYRT
IKDDTGSYHGPAVGDGGGSAARFIVESPTLGPGSCPGLRVNTSEGVVVLSHSGQKTEGPQ
RISAKISQIPQATTGDIESQQLVSMPQIKQEMYGHSHLGLQKGPSVQTDHGHPGKTQSTL
SSIKQESTGLEKMESTYQSGTQGVVKRLTQGNQQVMSYHPEYMPIKHQKKMDSADPHSTD
GAKTTWTSAISPAISPHLPSPPGNHVGFVTAAGDRGPSHISGVKQEPRSPRKSGHPHTPF
TKVSSPVGSSSPKGIPVMLSTGLPAMQQFITGVHHAEQSVIMPPHSVPGGMGRMSPHRVN
QSIPVGHLVQGDVRVNTPPLSVMSYGMHSEPLASPWSGPMQSRPTSPQAVGRDKVLKVNP
GSLRGHDGEQEEARRFHQASGRQSAAQLKPENMQSDPRGPLRGSVQLETYMAQRDMRVLM
HQQGERLATDPHSGHIQETLPSSSAPSSLPLSLSPRAHVLPKGVSEKDITKPLEAKRPHS
PLPKDGMMGIRQSGQAMASPQRVQLMPPGPSGSFTEYTGMYSNPRSIHSQIPETSPVGLN
QPPLNVTPTMAADPQTKPDGKMAQPVNMVQLLTKYPIVWQGLLALKNDTAAVQLHFVCGN
KALAHRSLPLQEGGALLRIVQRMRLEASQLESVARRMTGDTDFCLLLALPCGRDQDDVLN
QTQALKAAFINYLQAKLAAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRI
SSISPHLMIVITSV
NT seq
9765 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacatgttcgagaggag
aagatcgtggagcattttaaacggtatgggcgtgtggaaagcgtcaaagtcctgcggaag
cgagggtcagagggtggtgtggcagcctttgtggattttgtggatatcaaaagtgcgcag
aaggctcacaatgctgtcaacaagatgggagacagggaccttcggactgactacaatgaa
cctgggtcagtccctagtgctgttcggggccttgaagaaacttcaccctcgagcagtcga
gatgttacaggattctctaggggaacagttggtccagtgtttggcccacctgtttccctt
cacaccagagagggacgttatgaacggagaatagatggtagctcagaaagccgtgaacgt
gcatatgatcacagcccatatggacaccacgagcgcagtggcactttcgacagaccgcgt
cactacaacgctgattattaccgagatcgttccatgtttgctgctgctggcccggggagc
agtgctatcgcggggacctttgaggcatcagacccacattttgactctagaattcgagac
ccctttactctgactaattctacacgacgtgacctatacagagatgacagaggacgacgg
gttgatagaacctaccatcaccgtcggagccgatcatctcattcctcacagtcgaggcac
ccttccccacaacggaccacgggacaaacccccaaaacgcctcattctcctaaaagagct
cctttgtcccctgggaggggtccacgatctcgatcccacagcagatcttcaagctctgat
tctgtcagcagcaccagcagcacgggcagcggcagcgattcaaacagcagctcaagtgat
ggatctcgggcacattctgctcagtcttcagctacacatgcacccactcagtcttctatg
gggctcgactcagatgagccacgcagaagctttggaattaaagtgcaaaacctaccagtg
cgctcaacagacacaagtttaaaagatggactattccacgaattcaagaaacatgggaag
gtgacctcagtgcagatccatggagcttcagaagaccgctatggtttggtgttctttagg
caacaagaggatcaagagaaagccctcactgtctccaaaggaaagctgttttttggcatg
cttattgaagtcactgcctggaacggcccagaaacagagagtgaaaatgagttcaggccc
ttggatgggcggatagatgagttccacccaaaggcgacaaggaccctgtttataggcaac
cttgagaagaccaccagttatcaacaactcctcgacattttccaacgctttggagaaatt
gtggacattgacatcaagaaagtaaatggtgttccccagtatgcgtttgtgcagtattct
gatattgccagtgtctgcaaggccattaagaagatggatggagagtatctgggaagcaac
agactaaagcttggctttggaaagagtatgcccactacatgtgtttggcttgatggttta
gcaaccagtgttacagagcaatacctcacacggcatttctgccgttatggacatgtagtt
aaggttgtgtttgatagattgaaagggatggccctcatcttgtacaacaacacagatttt
gctcaggcagctgtaagggagaccaaaggttggaagattggtggcaataaaataaaggtg
gattttgcaagtcaagagagtcagatggcattctaccgatctatgcagacatctggtcaa
gacattagagacttctatgaaattcctgctgaacgacgagaggaacgaagacctccatac
catgaatttactgcagaaagggcttactatgagaatatacgaacgcctggcatctatcca
gaggaagctcgaagagactatgctgctcgcagcagagaccgttttcctgaactggaacac
tatcagggggaacactttgacccgcgttatcatgaagacccaagagactacagggattac
agagacccctttgagcaagacatccgaaaatacacatatattcaaagagagcgggaaaga
gagcgagaacgttttgaggccgaccgcaccaggtggagtccttcccatccaaggcgacct
gttactccgacggtatctccttcaccatctgaccgtgctcccagagactcagaacggcgg
gtttatagccagtcctctgagcgaagtggtagtgtgagttcaatgtcaccaccacacttt
gacaaatcggataagaccttgctggaacttgccgcgaagactgataagagcagccaacca
gaacgtgttgcaggtgctgagaaaaccaaacgtgcaaaacgaaaagagaaaggtgacaaa
gacaaagctgagaaggttaaatcaaggaaagcaaaggcgcaatccccatccaacccacta
cctgaaacggagcttgagactggttgtgatggagggtctggaagaggaaggggatcagac
caagattcccatgagaggcagaaaagtaaaggggatggtgaatctcttactggaaatccg
tcgtcaactgctcatcatgactctgtaaaaagtgaaagatctgaaatgagtaaaggtgag
aattcagacgtggatggaaaaaacagagtcaagaaacatctaaagcctgatattggaaat
gatgggaaagattcatcagtggattcagaccgccttgctgcaagaaaaaggcgctttgct
gattcaggaggcaggactattcgtcagaaaagaagcaggcatgaggaggaggatgttatt
ccatcctctgactttggtgctagtggcacatatttgaaagagttggacactgacaaaaac
aaagattcacaacggagagattcaagactcaaagctgacaaaagtggcactcagaaggat
ggtcaagaggaccttagagggcaaagagagaagtcggagggatctttggacccactggag
tcaaaacgacatccagggcacacttcatccagaaggttttcccatgaggggattacagac
caaagcagtataagagagcaagaacaccatgcggctttcaaatttgctctgaatgccgac
cctgacaaaagcgttaaaagcaaggaagaccacgttgatattgacctctctcagagttac
cgcaagcaaatggagcaaaatagacggttgcaccagcagcaacagcagcgggactctgac
aaatctgacaaaccaggaagtcctcacggaagtgaaacagaggacctggaacatcgcagt
cttgtgcatgaagttggaaaaccacctgaggatgtcacagataattttccgtctcacaaa
ctaaagaaagtagaccaatttgaacctgactcaggaattaagagggagcgtgtctacagg
agctttagacaaaaaagtgaagatcctgactggaacaacatgtcctctccaggacatcag
cacttctctctccatgcagatgaggacttcgtggagccttctcagaaagagttaagtaga
catgaggaaaagattcacccagatctggagctattagtcaagaggacacataacacacag
gcaaacaagccaaacacccctttacttagtgtggaggaagagcaacaaaagagatgggag
agcagagttaaacaagacgtgttgcctgacctgaacttttctagaagtctaagtaagaac
attcacaatcgcaagcgtttggaatatggtatgtggcatgacttggagcctggggaagta
cgatccgactctgaggaggaccgagagaacaaaccccactctcctatgccgtccacatct
gtgccttttgccgagaggccaagggttgacaggttttcagaccccaaactagcacatctt
gaaaggaacaaattctactcctttgcacttgatcaaactatcacaccggatacaaaggct
ctgctcgaacgtgcaaaatctctctcgtcttcaagagaagataactggtcgtttttggat
tatgattctcactttgcaggtttacgcagcagaaaggatactgagaaggtagaatcagca
ccacgacctacaccttcctggtacatgaaaaagaaaaagagtcgaattggagccgaagac
aaacttgatgacaggaaggaggaacctaagccagaggaacatgaacgcagggaacttttt
gcttcacgcttccttcacagccccgtctttgagctggactctaggcgacttcaacacttg
gaacgcaaacatgaagaacctgaacatacacaaaaccaacaacctggtcagcaagggacg
gtagatggtgaactagactcggggccagttgtccttttccatagtcgttttttggaactc
acacgactgcaacaacagaagaataaaacccatcagctgcaagaggcaaaagtagaccca
gtgcctacaggtgagattaaagtggaaaaagctcctgttcaagagcaaccggctctgcag
tcgcctgagacaatggaatctatcatggagccagaaattaaacccatcagtcctgctgaa
gagctgatctctgaacccagactcataccaactcctgtcacccaatttgtggtcaaagac
tttcctccacctgaagagaaatgtgttgtgttaaccccagccccggatctttatacccct
gtgtccgtcacaaaggaagaggaaaaagaagaggtgaaagaaaatgaacctgtcgtaccc
atgcagcacccattaactgaggcaccaactgatagtgaacctgcacaaatagcagcacct
gaacccagttatttagtggataaatgtaaaccttctccatctgaagggaaattggatatt
actgaggatgtaaaacctttctgtcctgaaaaaccaggccgtcgtgattctcatgatgag
tttgttagcatttcagaagcagagctggatcctgagacgacacaaccagaagtgcctgaa
gccacgagtcccataccacctagtcttctagaggaagagaaagaaacccacattgtttgg
aaagcagtagcagagcctgaggtagagaggaaacttcaagttagtaaagtgcagatgccc
attgatactgacacaaatgacgagccagcctcacctcagaaagagcataaaacaaaagaa
atgaaaaataaaaagggcaaacaatcccctgctcaagtttctccagttcccgccatgtca
acctctagttctgagaaacaagcaacacgcaagagtgagcgcattgacaaagagaagctg
aaacgtggatcatccccaagagctgaatcaaagtctacaggcaaatctcctattcatgga
tcagaacctgatatgtcagagccgggcatatcagcgggcagagcaagacgaagaaatgtt
aaatcagtgtatgccactccagttgaagatgatgcaccagttcattctggaaaggaaaca
gagtcaccacgctctgcgcgaaagcgaggtacagacaaagatgcaacactacaacaaaat
atcgagcaggatccacccgccccaatccctattgttaaacggggccgtcctcccaagaat
cgcagacgtggcgaagaaagttcaacagttaaagtagaaaaatctaaaatggacaataaa
gacacagattcaaatgaatcagaaggtggggaacgaattccaagagtgtcaaaagggaaa
tcgtcccctcatggcacaaagtgttcattgaatccaatgcagacagtcctaggatctgga
tcaacaaggaaggggaaaaaactgaggngggctgatgatcaggaaatggatttcacagat
gaagattctatggctttgcaagattcatcaagttcatgtaaagaagaaccaacaataaaa
gttgaccaaaagaaagaggagaaagacaaacaaggaagagaattgggcagagataaaata
gttttccatgaaaaggcttgtgagggtaaatcaaatgggaaagagaccgattccccagtc
ttagaagagaaacccaccttggaaaaagacaggattgttagaggaaaaaccaagttgaca
aggactcccaagtctcctattctcaagaacctcaaaatccgactaaatgtcacagaggtg
aaagatcttcttcagttaggggatgatgaacaagaagattcttcaaaaaagtcaaaacct
ggtgagcagagtgatcacgtttcaaagtgtactaatgccaacaaagggggttccaccaat
gaggaaaaggaagatgccaatttggaaaaaaaagagcttctggaatcgccaaaaagctta
atttcacaggagctagaattggagcaggctctgagaaacattgctaaacttacagatcca
ggttttccaacagaaccaccggtcccgccggtcccgcctacagaagtgaaaagtgaccca
gaggaagaaaaaccttatcctgctagcgaaacagaactcatggctgctattgactccata
actgctgaggatggaactgtatcattacctccagcagctccagcagctccagcagctcca
tcaagtgcaggcgtaggttcagaacctgagatacaagactcgattttgcctgcaaaagaa
aatgaatctgaaacaaatatacctgctttacaggaggagcctgtcttccctgccacaccc
aaaaagggaagacctaaacgtaaaggccaaaagcaagtaagaaaagattcaaaggaaggg
ccttcaatgtgtgaggaattgacaactccttcagctgatagcccaccttccagtgtaaag
actgttcctgcaacaactccatcagcagcaactactgcagttattacttcgaccacatgg
aagccagaacctgagcctttagctgtcaaggtctcagatgtagtcgcagagtctgagtca
tcttctggagaacagattcaacatcttaaatctgttaacccccagtctaagagtcaaata
tgcccaaagcctcaacaggtgtcacctgactgcatctccccttccctgtctcccctagcc
aacaggcctaacatcagacccattcaaaccagtagaattcctgtttctccaccagattgg
cgccatcagtctaaagatacaggggtctcctcttcatctcccatgccgttggtgttcaag
gaaaaccagcctttcccttcagaccctgaaaacatggatattgatcatggcacaagtgac
ttgagacagattcttatgaaacataaaaacatttctttgccaggcagtagttctattccc
agtaatctacccaccctgcgagatcagaacccctctgaaggcaatactccatcagctgtt
gtgccaaataagtcaccactatctggcagtggaatggcagctcatccagctccacctatt
gctcgagctccagcctcactaccttctcctgagacgaagtctgtgatctctgttattgcg
tccacggcaacctctgttatcagtcgtgtttgcaaccctcctgagcctgaggacaaagta
aacatgaacattggaaacccctgcgttgacatgactctacccaaaccagcctataggacc
atcaaagacgataccggatcataccatggaccagctgttggcgatggaggcggaagtgct
gcacgcttcattgtcgaaagccctactcttggtccagggtcttgcccaggtctgagagta
aatacatctgaaggagtggtggtattgagccactcgggccagaaaacggagggaccccag
aggataagtgcaaaaataagtcagatcccacaagcaacaacaggtgacatcgaatctcag
cagctggtgtccatgccccagataaaacaggaaatgtatggccattctcatttaggactt
cagaaggggccttcagtgcagacagatcatgggcatcctggtaagacgcagtcaactttg
tcttctattaaacaagagagcactggtttggaaaagatggaatccacttaccaatctgga
actcaaggagtagtgaagcgtctcacacaaggcaaccagcaagtaatgagttaccatcca
gaatacatgccaataaaacatcagaagaaaatggacagtgctgatcctcacagtacggac
ggagctaaaacgacttggacctctgctataagtcctgcgataagcccccatttgccgtct
ccgcctggcaaccacgtaggtttcgttacagcggctggtgacagaggaccctcccatatc
agtggggtcaaacaggagccgcgatcccctcgcaagtcaggtcatccacacactccgttt
actaaagtgtcctcacccgtaggctcctcgtcacccaagggcataccagtgatgttatct
actggccttcccgccatgcaacagtttattaccggtgtccaccatgcagagcagtcggtt
atcatgccccctcacagtgtgcctggaggcatgggacggatgtctcctcaccgggttaac
cagtcaattccagtggggcatcttgtccaaggagatgttcgggtcaatacccctcctctc
tctgtgatgagctatgggatgcatagcgagccccttgcctctccgtggtccggtcccatg
cagtcacggcccacctcaccccaggctgttggcagggacaaggttctcaaggtgaacccc
ggttctttgaggggtcacgacggggaacaggaagaagccaggcgcttccaccaggcttca
ggaagacaatcggctgcacagttaaaaccggagaatatgcagtcggatcctcgcgggcct
ttgcgcggtagtgtccagttagaaacatacatggcacaaagagatatgcgagtcctcatg
caccagcagggagagcgtttggccactgaccctcattctggacacattcaagaaaccctt
ccctcctcttctgcgccttccagcctgcccctgtcgttgtctccaagggcacatgttttg
ccaaaaggtgtgtctgagaaagatataacaaagccactggaggcaaagaggccacactct
cctcttcctaaagatggaatgatggggatcagacagtctgggcaagcaatggcatctccc
cagagagttcagctaatgccaccagggcctagtggctcattcacagagtacacagggatg
tactcaaacccaagaagcatccattctcaaataccagagacgtctcctgttggacttaac
cagccaccactgaacgtcacaccaaccatggctgcagacccccagacaaaaccagatggc
aagatggcgcagcccgttaatatggtgcagttgctcacgaaataccctattgtgtggcaa
ggcctgctggcactgaagaacgacacagctgcagtccagttgcattttgtctgcggtaac
aaagctttggctcatcggtcgctgccgcttcaagaaggaggcgcattgcttcggatcgtc
cagagaatgaggctagaggcttcacaactagagagtgtagcccgaagaatgacgggggac
actgacttctgtcttctcctcgctctgccatgtggacgagatcaagacgatgtcctaaac
caaactcaagctcttaaggccgccttcatcaactacttgcaggcaaagttggctgctggt
atcattaatattcccaacccgggatccaatcagcctgcctatgtgctacagattttccca
ccatgcgaattttcagagagccacttgtctcagctcgcccccgaccttctcaacaggatc
tccagcatctcgccacacctcatgattgtcatcacctctgtgtaa
DBGET
integrated database retrieval system
