Anoplopoma fimbria (sablefish): 129106838
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Entry
129106838 CDS
T09102
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04115
p53 signaling pathway
afb04145
Phagosome
afb04148
Efferocytosis
afb04350
TGF-beta signaling pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
129106838 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129106838 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129106838 (thbs1b)
04148 Efferocytosis
129106838 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
129106838 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
129106838 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129106838 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129106838 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129106838 (thbs1b)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Phagocytosis
Opsonins
129106838 (thbs1b)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129106838 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
Laminin_G_3
cEGF
TSP1_ADAMTS
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
129106838
NCBI-ProteinID:
XP_054474063
LinkDB
All DBs
Position
18:complement(14444708..14457370)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLTGLFLLLMLWSCESARVAESRDDNSVFDLFDLVQVPKNKHAVTLVKGDDPYSPAYKI
LNPDLIPPVSESHFRDLIDSIHAERGFLLLLNLKQFKHTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGRWKNITLFVQEDRAQLYAGCEEVNTAELDA
PIQSILTLETPATAQLRIGKGAVRDRFMGVLQNVRFVFGASLEAVLRNKGCQSSLTTDSM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCDDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIKTHIGIHSGVCLHNGIVHKNRDEWTVDDCTECTCQKSATVCRKISCPLIPCANAT
VPDGECCPRCGTLSDYAEDGWSLWSEWTHCSVTCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVRTCIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCTLTCGGGVQTRKRLCNDPAPNYGGKECVGNAKDNQLC
NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE
LNGVHRCENTDPGYNCLPCPSRYSGPQPFGRGVEQATAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGQFADPMYRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNSNQADHDKDGKGDACDHDDDND
GIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacaggactgtttctgctgttgatgctttggagctgcgagagcgcgcgagtc
gcagagagtcgagacgacaatagcgtgtttgacttgttcgatctcgtccaagtcccgaag
aacaagcacgcggtcaccctggtaaagggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtctccgagagccactttcgggacctgatcgattcc
atccacgccgagaggggattcctcctgctgctcaacctcaagcagttcaagcacacccgg
ggcagcctcctgaccgtggagaagcgggacggatccggacccgtgttcgagatcgtctcc
aacggcaaggcgaacaccttggacatagtcttctccaccgagaacaagcagcaggtggtt
tccattgaagatgtggacctggctacgggccgatggaagaacatcacgctgttcgtgcag
gaggaccgtgcgcagctgtacgcggggtgcgaggaggtgaacaccgccgagctggacgcg
cccatccagagcatcctgacgctggagaccccggccaccgcgcagctcaggatcggcaag
ggagccgtgagggacaggttcatgggggtccttcaaaacgtgaggtttgtgtttggagca
tcgctggaagccgtcctccgcaacaaaggatgccaaagctccttgacgactgactctatg
atcctggagaacctcaatggctcttcagccatcagaacagagtacactggacacaagact
aaagacctgcagatggtctgtggcttctcctgcgatgacctggtcagtatgtttaaggag
ctgaagggcctcggtgtggtggtcaaggagctgtccaatgaactccgccagctgacggat
gagaacaagctgatcaagacccacattggcattcacagtggcgtctgcctccacaacggc
atcgtgcacaagaacagagacgagtggaccgtcgacgactgcaccgagtgcacttgtcag
aagtctgctaccgtgtgccgcaagatctcctgccccctgatcccctgtgctaatgctact
gttcccgatggagagtgctgcccacgctgtggaacactgagcgactatgcagaagacggc
tggtcgctgtggtctgaatggacccattgttccgtgacgtgtgggcggggcatccagcag
cgcgggcgctcttgcgaccgtatcaataacaactgcgagggtacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgattcaagcaggacggcagctggagccattgg
tcaccctggtcatcctgctccgtcacttgtggtgctggagtcagaacctgcatccgcctc
tgcaactcccccacccctcagcttggaggaaaggactgtgagggagagggccggcaaacc
gagaagtgtcagaaatctccgtgccccatcaatggcaactggggaccctggtcaccatgg
gatacctgtactcttacctgtggaggtggtgtccaaactcgtaaacgtctgtgcaatgac
cctgcaccaaattacggtggcaaagagtgtgtcggtaatgccaaggacaaccagttgtgc
aacaagaaagcctgtccaattgatgggtgcctgtctaacccctgctttgcgggagccaag
tgcaccagtttccctgatggttcctggaagtgtggaaagtgtccagctggctacactggc
aatggtatcaagtgtaaagatgtagatgagtgcaaggaggtcccagatgcttgctttgag
ttaaatggtgtgcaccgctgtgagaacaccgatcctggctacaactgtctgccatgccct
tctcgctactcaggaccccaaccgtttggcagaggtgtggagcaggctactgctaagaaa
caggtgtgcacgcctcgtaatccctgcctcgatggaagccatgactgcaacaaaaacgcc
cgctgcaactacctcggacaatttgccgatcccatgtaccgctgcgagtgcaggccaggc
tatgctggcaacggccatatctgtggagaagacacagatctggatggatggcccaacgct
gacttggtgtgtgtggagaacgccacctaccactgcaaaaaggacaactgtcccaacctt
cccaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacaatgat
gatgacaatgatggcattcctgatgatagggacaactgtccattcgtgtacaaccccagg
cagtatgactacgaccgcgatgacgtgggcgaccgctgtgataactgcccctacaatagt
aacccagaccaaacagacacagacaataatggagagggagatgcctgcgctgtggacatt
gatggagatggcatactgaatgaaaaggacaactgcccctatgtgtacaatgtcgaccag
aaagacacagatctggacggagtgggtgacatgtgtgataactgcccgctggaacataat
cctgatcaggtggattcagatgacgaccgcgtgggagacaagtgcgacagtaaccaggac
atcgatgaagatggacaccagaacaacctggacaactgcccgtacatccctaattccaac
caggctgaccatgacaaggatggcaagggagacgcctgtgaccacgacgacgacaatgac
ggcatccccgacgaaaaggacaactgcagactggccttcaaccctgaccagctggactct
gatggtgatggccggggagatgcttgtaaagacgactttgaccaagacaacgtgcctgac
atctacgacgtgtgcccagagaacttcgacattagtgagacagacttccgcaagttccag
atggttcctctcgaccctaaaggcacctcgcagattgatcctaactgggtcgtccgccat
cagggcaaagagctggtacagactgtcaactgcgaccctggcatcgctgttggttaccac
gagttcaattcagtggacttcagtgggactttcttcatcaacacagaaagggacgatgat
tacgcaggctttgtgttcggctatcagtccagctccaggttctatgtggtgatgtggaag
cagataactcagacatactggtcgaataaacccaccaaggcccagggctactcaggcctg
tccattaaagtggttaactccaccactggcccaggagagcacctcaggaatgccctctgg
cacacaggaaataccccaggacaggtccgcactctctggcatgaccctaagaacgttgga
tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaactggactcatt
agagttgtgatgtacgagggcaagaagatcatggcagattctggtagcatctatgacaag
acatatgccggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgtttaa
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