KEGG   Anoplopoma fimbria (sablefish): 129109360
Entry
129109360         CDS       T09102                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DR beta 5 chain-like
  KO
K06752  MHC class II antigen
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04145  Phagosome
afb04514  Cell adhesion molecules
afb04672  Intestinal immune network for IgA production
afb05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    129109360
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    129109360
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    129109360
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    129109360
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129109360
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129109360
  Exosomal proteins of epithelial cells
   129109360
  Exosomal proteins of breast milk
   129109360
SSDB
Motif
Pfam: MHC_II_beta C1-set Ig_3
Other DBs
NCBI-GeneID: 129109360
NCBI-ProteinID: XP_054477372
LinkDB
Position
20:23226180..23229131
AA seq 190 aa
MTSGYVYQMIYDCEYGDDITDVVFFVKNLFNQKIITLYDSRVGKYVGFGESGMKNADHYN
HQGWKMEERKRQVETLCRYNARLFRRSTLDRLVPPVIKVHPAKPIDYGKRSMLECSVVGF
FPQEVRLTPRRGERVSCRVDHSSQRKSLEVDWDTSSLDAKHLKKTLGIMFFFIGFTAAAG
GAAYYWWKQR
NT seq 573 nt   +upstreamnt  +downstreamnt
atgacaagtggctatgtatatcagatgatatatgattgtgagtatggtgacgacatcacg
gacgtggtcttctttgtgaaaaacctatttaaccaaaagatcatcaccctctatgactct
cgggtcgggaagtacgttggctttggagaaagcggcatgaagaacgcggaccattataac
caccagggctggaaaatggaagagagaaagagacaagtggagactctctgcagatacaac
gccagattattcagaaggagcacgctggacaggctcgtgcctccggtcatcaaggtccat
ccagccaagccaatcgactacgggaagcggtccatgctggagtgtagcgttgtggggttt
ttcccacaggaagtgaggctcacacccaggagaggggagagggtgagctgcagggtggac
cacagcagccagaggaagagcctggaggtggactgggacacctcttcactggatgctaaa
cacctgaagaagactttggggatcatgttcttcttcatcggcttcactgcggcggctggt
ggagcagcttactactggtggaaacagaggtga

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