KEGG   Anoplopoma fimbria (sablefish): 129109390
Entry
129109390         CDS       T09102                                 
Name
(RefSeq) DLA class II histocompatibility antigen, DR-1 beta chain-like
  KO
K06752  MHC class II antigen
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04145  Phagosome
afb04514  Cell adhesion molecules
afb04672  Intestinal immune network for IgA production
afb05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    129109390
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    129109390
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    129109390
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    129109390
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129109390
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129109390
  Exosomal proteins of epithelial cells
   129109390
  Exosomal proteins of breast milk
   129109390
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 C2-set_3 DUF3953 DUF5924 DUF2273
Other DBs
NCBI-GeneID: 129109390
NCBI-ProteinID: XP_054477425
LinkDB
Position
20:complement(15453211..15457554)
AA seq 245 aa
MRTHIFFSLPFLLLLCSRAGALFGLGLLRCQFTSLDDSVYVEQYYFNKKLLLQYNSTLRK
FTGYTEKARDVADGLNKSPAIMESEKKNEEKCKSHLPLVFDVLFKTVEPTVRLRSVDIAG
SKHPGMLVCSGYGFYPKQIRLTWQRNGKNVTSDVTSTEELPNGSWLYQIHSYLEFTPRPG
DKITCMVEHASLTQPKLYEWDPALESQRNKIAVGTAGLLLGLVFLITGLIYYKKNNDGRV
LVPTS
NT seq 738 nt   +upstreamnt  +downstreamnt
atgcgtacccacatcttcttttcattgccgtttctgctccttttatgttcccgagctggt
gctctttttggtcttggtttgcttcgctgccagtttacttccttggatgattctgtttat
gtggagcagtactacttcaataagaagcttctgttacaatacaacagcactttgcgaaaa
tttaccggctacacagagaaagcaagagatgttgcagatggcctcaacaaaagccctgca
ataatggaatcagaaaaaaagaatgaagagaaatgcaaatcccatctcccattggttttt
gatgtcctttttaaaacagtggagcccaccgtcaggctgaggtcagttgatatagcaggc
agcaaacatccgggcatgctggtctgcagtgggtacggcttttatcccaaacaaatcaga
ttgacttggcagaggaacggaaagaatgtgacatctgatgtgacgtccactgaagaactg
cccaatgggagttggctctaccagatacactcatatctggaatttacaccaagacctgga
gacaaaatcacatgcatggtggagcatgccagccttacgcagcccaaactttatgagtgg
gacccagcacttgagtcacagcggaacaaaattgctgtcgggacagcagggctgcttctg
gggctggtgtttttaataactgggcttatttactacaagaaaaacaatgatggccgagta
ttggtgccaacaagttaa

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