Anoplopoma fimbria (sablefish): 129110516
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Entry
129110516 CDS
T09102
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129110516 (smchd1)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129110516 (smchd1)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129110516 (smchd1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
129110516 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
YnfE
Motif
Other DBs
NCBI-GeneID:
129110516
NCBI-ProteinID:
XP_054478573
LinkDB
All DBs
Position
21:complement(7185642..7208443)
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AA seq
1964 aa
AA seq
DB search
MERGGARRRVTVHDRRSEKKEKLRTHCLDTTGLDFNGFLELLQRKFAIHPHETYVLATTD
RIVLDFDKFRQLQDGSTLHLLQRENQALAVATDELIKFEPHYDTLIRGGLYEYYASEGQK
SLPYAFAELIDNSLSATARNTGVRTIEIRMVFDETLGKPTVIVLDNGCGMTSKQLKNWAV
YRLSKFTREDVTVGGQQEGYVRPNPVRRSLNSDISYFGVGGKQAVFYIGDSTRMITKPVG
SPDVHELLLSKEEFERREKEKKDIYSASIKNRKPGDSSHVRKEDGRCLRSLIAEESGKES
FTAVVITGVLPEHIAFLKQDFGLWTRQLAHIYHYYIHGVNGKEMLSCSSNSDHLPKIEIQ
ITLREKPPRIPRALNLREVDNDMQTLYINTSVDTFEFKAVTEDDGTVEGVIRYHPFLYDS
ETYPEDPDALQASVDDDDDIESGARHQARGKKPIFDCFWNGRLIPYTKVHEFDWCSPNRG
TKELAECYSRLSGALFSDDKFQVTTNKLTFMDLELKLKQKGTFFTRIVNSQKQRGNIQRD
FTAWLKNCHEKWDKQIKFFGYKETITRDDLPTKKNYPWAVFSSIEWDGKIYQTGQLVKSQ
KTVPIIHGHVVRFLLYGKHDGSVFATGGEVEVVLEPKAFYDKIKTIAISKIDKTATDAAI
QNNIDNDFAKLPDLLKVDWPESNPWPLNAARPAGTPFGPLKVEILNKKGELLSKMPTVGQ
GAGKKLSVGLKVILNGPKGNETVLSLMAQHGKWGFWFNKIEKLTKLGNYTLSLNTMINEN
NVIVFGGRALPSYKIKFTITAGAAESFVVGEVSATLKVGVPFDIPLLIKDGCNHSATPPA
DLKPELQCSGLVLSYERVDNTGTTFTIKGVKARGKILNQQSKTYDLKVTLPGLKTDTQTI
KICLLPGYPHSLHVTPVDNPITVENGNPVTFNVEIHDEAGNITAHPKQTVCCQVREFPQV
TTDCSTTGAGLLVTKPINLKIINGEPQNLIVTLGVPTQKKIQLVMRQLKVMPSTRVSRME
LCSDANLVLRDNEKIEWLAGGLLENLFYKLYDEAGKEVPPTAQIASMIKVNWTGDVNPKD
LVQGKLPDLKVPTQVQTAVFYQVSYKDQSVSVSFHIMPCPDEPTRLKATLLQNTVKLGEI
LPGNINLELVDQYDNVSKTLASTCMNHMTVDAEGLDKSAIAFSWQESSSSVLVTGVQFQS
GLLGPRELCFTYRSFVERIMVKVTAGVPALFKLISGPEQPLQVMNDRGIATPFVVQLCDD
WGNPTTDQRVVVEVRPSAPTLEVKTAVTSHPVNADGKASFTVSSVSAPKGFYQLEFKGSL
NQKSIPGSIVNLTVVPDPTKPVHLSVEYNNSAVFLAGGLFPVFSVTVVSDEGSPMTTLNP
AAASMLLWKGAPSGQTPPQTVTELKCNKPMENEKKDCFHFRDKDIPEHVGEYTIQFSLQI
KDKKALLSDQISINVVANRPYKLGPDSQPLTPVVSCCKVIANRTLVENMTLRIMDSCGNP
AGQNLYGKVVVSIQNSSGDGNKILPLFEGKTNRLTINLAGGKAHITRLVIMENSPGENGS
AYILLFTPEVVSFPTPLAHFKLPFHFSNDADNKRKMTELSRKKDELTTAIAKYEDIFHTY
SDLLNLLTPQHLNACEKEKTLRNKLISRNVDIAETIPDIDRLLKEKKTEVDRIQQTPRRV
CSIPDPFSGQQDVLGMVGHLAFVQDDDAARVISWHIRSDMDCVITKTIAAARKIYDNTQG
SQQVMSLDSVNVSADNRLLPHIRGSRKLFDPPGNPVHAKDLLLYTEDLESRTLVFKNILR
DTILIDDLDSATNYRKAVVQNKQQCPTILTRQGDRISATGKFGGKQNKAPPMSTLKVFGA
PLPQDYYTLKEHIDLLSQYRSALEKKNHAVKERDDHLSTMKSPDLLNKRKEMEEKTEQLK
EIERQLMSTPVRPVKRVLTVLVSHPASSQRERSRGQHKRWTSPA
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggagcgagggggagcccgcaggagggtcactgtccacgaccgtcgctccgaaaagaaa
gagaaactcaggacgcattgtctggacacgactggtctggacttcaatggctttcttgaa
cttctgcaaaggaaatttgcaatccatccacatgaaacatatgtgctggccacaacggac
cgaatagtcctggattttgacaaattcaggcagctccaggatggcagcaccctccacttg
ttgcagcgggagaaccaagctctggcagtggcaacggatgagctcatcaagtttgagcct
cattatgatacgttgatccgggggggcttgtatgagtactacgccagcgagggccagaaa
tcactgccatacgcattcgctgagctgatcgacaactccctttcggccacagctagaaac
acgggagtgaggacaatagagatacggatggtgtttgatgaaactctcgggaaacctaca
gtgattgtcttggataatgggtgtgggatgacctctaagcagctcaagaactgggcagtg
tacagactctctaagttcaccagggaagatgtcacagttggaggtcagcaagaggggtat
gttcggcctaatcctgtccgtcggagcctcaacagtgacatatcctactttggagttgga
ggaaaacaggctgttttctacatcggagactctaccaggatgattactaaaccagttggc
tctccagatgttcatgagctgcttctgtcaaaagaggagtttgagagaagagagaaggag
aaaaaggatatttacagcgcttccattaaaaacaggaagcccggtgactcttcacatgtg
cgtaaagaggatggacgctgcctccgttccctcatcgctgaggaatctgggaaggaaagc
ttcacagccgtggtcatcacaggagtcttacctgagcatatcgcctttttgaaacaagat
tttggtttgtggaccagacagctagcccacatttatcactattacattcatggagtcaat
ggaaaggaaatgcttagctgctcttcaaactcggatcatctacctaaaatcgagattcag
atcactttgcgcgagaagcctcccagaattccccgtgcgctgaatctaagggaagttgac
aacgacatgcagactctgtacataaacacctccgtggacacgttcgagttcaaggccgta
accgaagacgacggcacagtggagggagtcattcggtatcatcccttcctctatgacagt
gagacttaccccgaagaccccgatgctctgcaagcctctgttgatgatgatgacgatatc
gagtctggagcccggcatcaggcgagagggaagaagccgatatttgactgtttctggaat
ggacggcttataccttacaccaaagtgcatgagtttgactggtgttctccgaatagagga
acaaaggagcttgcagagtgttacagtcgactttcaggagcgcttttcagtgacgacaaa
ttccaggtcaccacaaacaagctgaccttcatggacctggagctaaagctaaagcagaag
ggcaccttcttcacacgcattgttaattcacagaaacaaagaggaaacattcagagggac
tttacagcgtggctgaaaaactgccacgagaagtgggacaagcaaataaagttctttggc
tataaggagaccataacacgggacgatctgcccactaagaaaaattatccctgggcggtg
ttctcctccatcgaatgggacggcaaaatataccaaacaggccaacttgtgaagtctcag
aaaacggtgcccattattcatggtcatgtggttcgtttcttgctgtacggaaaacatgac
ggcagtgtctttgccacaggaggagaggttgaagtggttctggaacccaaagcattttac
gacaagataaagaccatagccatttccaagattgacaagaccgccactgatgcagccatc
cagaacaacattgacaatgacttcgccaagcttccagatcttctgaaagtggattggcca
gaaagtaacccctggccactaaatgctgctcgtccagctgggactccatttgggccactc
aaagttgaaattcttaacaagaagggagagttgttatccaagatgccaactgtgggccag
ggagcagggaaaaagctgagtgttgggctcaaagtcatcctgaacggtcctaaaggaaat
gaaacggttctctctcttatggcccaacatggaaagtggggtttctggttcaacaaaatt
gaaaaactgaccaagctggggaattatactctgtccctaaacacaatgataaacgaaaac
aatgttatcgtctttggaggcagagcgcttccgagctacaaaatcaagttcaccatcacc
gccggtgctgctgagagtttcgttgtgggggaagtgagcgccactcttaaagtaggagtg
ccattcgacattcctctgctgataaaagatggttgcaaccactcagcaacgcctcctgct
gatctcaaacctgaactccaatgcagtggcctggttctgagttacgagagagtggacaac
acagggaccaccttcaccatcaaaggtgtcaaagcaagagggaaaatcctgaaccaacaa
tccaagacatatgacctgaaagtgaccctgcctggcctgaagacagacacacagactatc
aagatctgtctccttcctggttatccacattccctccatgtgacgccagtagacaaccca
atcacagtagagaacgggaaccctgtcacgtttaatgttgaaattcacgatgaggctgga
aacatcaccgctcaccccaaacagaccgtttgctgccaggttcgggagtttccacaagtg
acaactgactgcagcaccacaggagctggactgcttgtgacaaagcccataaacctgaaa
ataatcaatggagaaccacaaaacctcatagttacgcttggggtgcctactcagaagaaa
atccagttggtcatgaggcagctgaaggtgatgcccagcacaagagtgtctcgcatggag
ctctgcagcgacgcgaatttggtgctgagagacaacgaaaagatagaatggctggctgga
ggccttctggagaacctgttctataagctgtatgatgaggctggtaaagaggttcctccc
actgctcaaatagcctccatgatcaaggttaactggacaggagatgtaaatccaaaagat
ttggtccaagggaagctgcctgacttaaaggtgcccacgcaggtgcagacggcggtcttc
taccaggtgtcctacaaagaccagagtgtgtctgtctccttccacataatgccttgtccg
gatgaaccaacacgactcaaagcaactctactccaaaacacagtgaagcttggagaaatc
cttcctggaaacatcaacttggagcttgtggaccagtatgataatgtatccaagacactt
gcctccacctgtatgaaccacatgactgtggacgctgagggtctggacaaatcggccatc
gcctttagttggcaggagagcagcagttctgttctggtaacgggggtgcagttccagtcc
gggcttcttggccccagagagttgtgcttcacctacaggagctttgtggagcgcatcatg
gttaaagtgacggctggagttcctgcactgtttaaactcatcagtgggcccgaacagcct
ctgcaggtgatgaatgaccgaggcatcgccacgccgttcgtcgtccaactgtgtgacgac
tggggcaacccaactacagaccagagggtggtggtagaagtcaggccttcagctccgaca
ctcgaggtgaagacagctgttacttcacatcctgtgaacgcagacgggaaagcctctttc
actgttagtagtgtgagcgcgccaaaggggttctatcagctagagtttaaaggttctctc
aaccagaaatccatccctggttccatagtgaatctcaccgtcgtacctgatcccaccaaa
cctgtccacctgtcggtggagtataacaacagtgccgttttccttgctggaggcctcttc
ccagtcttctcggtcaccgtggtgtctgatgagggaagcccgatgacaactttgaacccc
gctgctgcgtccatgttgctgtggaagggagcgccgtcaggacaaactcctccacaaacg
gtcactgagctgaagtgtaataaacccatggagaatgaaaagaaagactgttttcacttc
agagataaagatatcccagaacatgttggagagtacaccatccaattttctctacaaata
aaagataaaaaagccctgttaagtgatcagatttctataaacgtggtggccaatcgacct
tacaaactgggacccgactctcagccactgaccccggttgtttcctgctgcaaggtcatt
gccaaccgaactttggtggagaatatgactctgaggatcatggattcatgtggaaaccca
gctgggcagaacctgtacgggaaggtggtcgtctctatacagaactccagcggagacggc
aacaaaatcctccctctgtttgaaggcaaaaccaaccgcttgacaataaacttggcagga
ggaaaggcccacattactaggctggttatcatggagaacagccccggcgagaatggaagt
gcatacatcctcctcttcacacctgaagttgtatcgtttcccacgcccctcgctcatttt
aagctccccttccatttttccaacgatgctgataataaaaggaaaatgactgagctgtcc
aggaagaaagatgagctcactacggccattgctaaatacgaagatatctttcatacatat
agtgacctccttaatttgctgacccctcaacacctgaatgcatgtgaaaaagagaagacc
cttcgaaataagctgatcagtaggaacgtggatattgccgaaactatcccagatattgac
agactccttaaagagaagaaaaccgaagttgaccggatccagcaaacccccagaagagtt
tgctccatccccgatcccttcagtggccagcaggatgttttgggaatggtcggccacctg
gcctttgtgcaggacgacgatgctgcgagggttatctcctggcacataaggagtgacatg
gattgtgtcatcaccaaaacgatcgcagcagcacggaagatctatgacaacacccagggc
agccagcaggtcatgtcccttgacagtgtcaatgtgtcagcagacaacagactgttgcca
cacataagaggttcccgcaagctctttgatccccctgggaaccccgtccacgccaaggac
ctcctgctttacaccgaagacctggagagccgtacccttgtttttaaaaacatcctcaga
gacactattctgattgatgacctggattctgcaacaaactacagaaaggcggtggttcag
aataagcagcaatgtcccaccatcctgaccagacagggcgataggatcagtgccacgggc
aagttcggaggcaaacagaacaaagcccccccgatgagcacgttaaaagtgtttggagcc
cccctcccgcaagattattacaccttaaaggaacacatagacctgctcagccagtaccgg
tcagctctggagaagaagaatcatgcagtaaaggagcgcgatgatcatttaagcaccatg
aaatctcctgacctgctgaacaagcgaaaagaaatggaggagaagacagaacagctgaag
gagattgagagacaacttatgtcgaccccagtaagaccagtgaaacgggtcttgacggtg
ctggtgagccatccagcatcatcccaaagagagcgaagtagaggtcagcataagaggtgg
accagtccagcctga
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