Anoplopoma fimbria (sablefish): 129112780
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Entry
129112780 CDS
T09102
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04115
p53 signaling pathway
afb04210
Apoptosis
afb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
129112780 (apaf1)
04115 p53 signaling pathway
129112780 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129112780 (apaf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
APAF1_C
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WHD_APAF1
Beta-prop_WDR90_POC16_2nd
NB-ARC
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
CARD
Beta-prop_WDR75_1st
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_EIPR1
RMC1_N
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_ACSF4
Beta-prop_DCAF4
CARD_2
WD40_RFWD3
WD40_like
WDR54
Beta-prop_SPT8
VPS11_N
AAA_16
AAA_18
nSTAND1
AAA_22
Motif
Other DBs
NCBI-GeneID:
129112780
NCBI-ProteinID:
XP_054480980
LinkDB
All DBs
Position
23:complement(7561724..7607296)
Genome browser
AA seq
1258 aa
AA seq
DB search
MALEEGARSCLLRFRHQLEQDIKPSYLMDHMISDGVLTVDEEERIKTQPTRKDQAVALLE
LLLRKDNRAYISFYNAMVKEAYNDLANLLHHDLPRVLPGAHTPSSDCCTPYVQAMLSEGG
VPQRPVVFVSRPELVNRIREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRHHGLIEECF
PGGIHWLSIGQLDKPGLLVKIQSLCFRLEQSLDSQSHYRPPNTLDEAKERLRFLTLRRYP
RSLLILDDIWDSAVLKAFDIHCRILLTTRNRSLADSVSGAKYEVEVESGLDDNKGLEILA
LYTKTKLHGLPEEARSIVRECKGSPLVVSLIGALLREKPNRWRYYLHQLQQKQFKRIRKS
SSYDYDALDQAMSASIEVLPEEHQELYKDLTVLEKDFKVPAKVLSVLWDLVPEEVEDILE
EFVNKSLLFVDSNNKPYLYYLHDLQLDFLVEQNRTQLESLHNKVVHQYQQHYTDGPPTSG
DEECLYWIRFLTCHMAKANLFQELYSLMFSLDWVSTKAQLMGPAYLINDYVEYGPILDKE
NSEVRSQFQEFLSLNGHQLEQRPFPDVVQLALSQPHTSEVYRQALLQAQDRASKGKLYFD
WLNKNSVESLSRLVIHPHQGSIYSACFSHDGAKIASSGASKTLKVFKSTSGEKLTEIQAH
DDEVLCCAFSPDDGLLATCSSDRKVKVWNVERAMLLRVFEEEHEEQVNHCQFTNTTRRLL
LATCSNDKFLNVKLWNLNKPSSQNTMFGHFEPVNHCCFSPDDSYVSTSSNDGTVKLFQVA
SANEWKTINVRDMFAESDEEVLVKCSTWTADGKRIICAARNAALVFDVETSEMLLEIRTN
RLSTVQYCHACPTSNLLAIAFSNYAVELWDLEANKKMADCSGHLSWVQRVQFSPDGSQLL
SCSDDQTVRLWETKKVHTSSAVCLKRDSDVLFNDEEIIVSAADNCNRLQVRDGRTGSVLF
QSEEKSSRIRCTCLCRQPSAVALGQDDGTVQVLEVPSGKLLATLQGHTKTVLHCRFSQNG
QTLITSSEDTTIRVWRWQSNECKVLQGHKEQVRCFSLLSTSPADTRLLSWSFDGTVKMWD
IESGEKLRDIEAHRGAILSCHVSPDGCLFATTSADMTAKLWHCETWQCVHTLSGHQECVR
SCRFSWDNRRLATGDDNGEIRLWSVKDGSLLRICSRDGKDGMDSLHGGWVTDLHFSSDNS
LLVSTGGYIKWWDVEKGEALQTFFPSGTALKRIHVSSDFSTFVTIDSMGILYILQRVV
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggaggaaggggcgcggagctgtctgctgcgctttcgccaccaactggagcag
gacatcaagccctcctacctgatggaccacatgatcagtgatggtgtgctgactgtggac
gaggaggagaggatcaagacccagcccaccaggaaggatcaggctgtggccctgctggag
ctgctgctcaggaaggacaaccgtgcctacatctccttctacaatgcaatggtcaaggag
gcatacaatgatctggccaatctgcttcatcatgacctaccccgcgtcttacctggggca
catacgccctcctctgattgctgcacaccttatgtccaggcaatgctcagtgaaggcggc
gtgcctcagaggcccgtggtgtttgtcagcagaccagagcttgtgaaccgcatcagggag
aaactctaccggcttcagaaggagcctggctgggtcactgtcttcggcatggctggctcg
ggcaaatcggtcctggctgctgaggctgtccgacaccacggactcatcgaagagtgcttt
cctggtggaatccactggctgtccatcggccagctggacaaaccaggcctgctggtgaag
atccagtcattgtgtttccgtctggagcagagccttgattcccagagccattaccggcct
ccgaacacactggacgaggccaaggagcgtctgcgcttccttacgctgcgcagatatcca
agatctctgctgattctagatgacatctgggacagtgcagtgctgaaggcgtttgatatc
cactgtcggattcttttgaccaccagaaacagaagccttgctgactctgttagtggggcc
aaatacgaggtggaagtggagagtggtctggatgataacaagggactagagatccttgct
ctgtacacgaaaacaaaacttcatggacttcctgaggaggctcgcagcattgtcagagaa
tgcaaaggttccccactggtggtgtccctgattggggctctactccgagagaaacccaac
cgttggcgttactacctccaccagctgcagcagaagcagttcaagcggataaggaagtca
tcgtcatacgactacgacgccctcgaccaagccatgtctgcgagcattgaagtcctacct
gaggaacatcaggaactctacaaggacctgacggtgctagagaaggacttcaaagtccct
gcaaaggtgctgtctgttctgtgggacctggtgccggaggaggtggaggacatcctcgag
gagtttgtcaacaagtctctgctctttgtggacagtaacaataaaccctacctgtactac
ctccatgacctccagctggacttcctggtggagcagaatcgcacccagctcgagagcctc
cacaataaggtggtgcatcagtaccagcagcactacacagatggtcctcccacctcagga
gatgaggaatgtctctactggatcaggtttctgacctgccacatggccaaagccaacctc
ttccaggagctctactcactcatgttttctctggactgggtcagcaccaaggcccagtta
atgggtccagcttacctcatcaatgactacgtagagtatggacctattctggacaaagag
aacagtgaagtgcggagtcaattccaggagttcctctctctgaacggccaccagctggag
cagcgtcccttccccgacgtggtgcagctggctctgtctcagccacatacgtcggaggtc
tacagacaggctctgctgcaggcacaggaccgggccagcaaagggaaactctactttgac
tggctgaataagaacagtgtagagagtctgtcccgtctggtgatccacccccaccagggc
tccatctattccgcctgcttctcccatgatggagccaagatcgcctccagtggagccagc
aagacactcaaggtgttcaaaagcacctcaggtgagaagctcacagagatccaggcccac
gacgacgaggtgctctgctgtgccttctcccctgacgacggtctcctagcaacctgctcc
agtgacaggaaagtcaaggtgtggaacgtggagcgagccatgctgctccgggtctttgag
gaggagcacgaggagcaggtcaaccactgtcagttcaccaacacgacgcgacgcctcctg
ctggccacctgctccaacgacaagttcctgaatgtcaagctgtggaacctcaacaaaccc
tcctcccagaacaccatgtttggccactttgagccggtcaaccactgctgtttctcccct
gatgactcctatgtgtccacgtcctccaacgacggcaccgtcaagctgttccaggtggcg
tctgccaatgagtggaagacaatcaatgtgagagacatgtttgcagagagcgatgaagag
gtcctcgtcaagtgcagcacctggactgctgacggcaaacgcatcatttgcgcagcgagg
aacgctgctctggtgtttgacgtggagacatcggaaatgttgttggagatcagaacgaat
cgtctgagcacggtgcaatactgtcacgcctgccctaccagtaacctgctggcaattgcc
ttctcgaactacgctgtggagctgtgggacttggaggccaataagaagatggccgactgc
agtggtcacctgagttgggtgcagcgtgtccagttctctcctgatggctcacagctgctc
tcctgctccgacgaccagactgtcaggttatgggagacaaagaaggtgcacacctcctca
gctgtctgcctgaaaagagactctgacgttcttttcaatgatgaagaaatcattgtgtca
gctgcagacaactgcaacagactgcaggtgcgtgatggcaggacgggctcggtgctgttc
cagtcggaggagaagtcgtccaggatccggtgtacgtgtttgtgcagacagccctctgct
gtggccctgggccaggacgatggcaccgtacaggtgttggaggtgccctccgggaagctc
ctagccactctgcagggacacaccaagacagtgctgcactgccggttcagccagaacggc
caaacactgatcacgtcctccgaggacaccaccataagggtgtggaggtggcagtctaac
gagtgtaaagtactgcagggtcacaaggaacaggtcagatgcttctctctgctctccacc
tcgcctgctgacacaagactactgtcctggtccttcgatggcactgtcaagatgtgggac
atagagagtggcgagaagctgcgggacatcgaggctcaccggggagccatcctatcctgt
cacgtctcgccggacggatgccttttcgccaccacctctgctgacatgactgctaagctg
tggcactgtgagacctggcagtgtgtccacacactgagcggccaccaagagtgtgtccga
agctgccgattctcctgggacaaccggcgcctcgcaacgggagatgacaacggagagatt
cggctctggagcgtcaaggacggctctttgctaaggatttgttcccgtgacggtaaagac
ggcatggactcactccacggaggatgggtgaccgacctgcacttctcctcggacaactct
cttctagtctcgactggcggctacatcaagtggtgggatgtggagaaaggcgaggccctg
cagaccttctttccgtcgggaacggcgctgaagaggattcacgtctcatccgacttctcc
accttcgtcaccattgacagcatgggcatcctctacatcctgcagagggtggtgtga
DBGET
integrated database retrieval system
