Anoplopoma fimbria (sablefish): 129113538
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Entry
129113538 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor TIAM1-like
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04530
Tight junction
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129113538
09142 Cell motility
04810 Regulation of actin cytoskeleton
129113538
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Ortholog
Paralog
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
129113538
NCBI-ProteinID:
XP_054481869
LinkDB
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Position
24
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AA seq
1684 aa
AA seq
DB search
MGNVESQNGDSGFYGDATGHLSRKHTSRSLRIPSKQPVTRRSRHSSSVKQEHRNSDASTR
SSSTPSIPQSLAENGLEPFNGTDAFGEFGINPHWTQRVAMTMRPESYQQDDDPLATPTPE
TSEADTVAQAGGEDSMGGGGGGEGDVVGEERYLQRMTEGPREGGSFKKKRSKSADMWRED
SLEFSLSDLSQEHLTSTEEMIDGGEEEEEEQFTRPRGNAGSAERASSLDHLCSQQSPGLR
GQRSRYAKNRRETQCDEGGEGLMSPTEEDGGGYGAFTLPCRRSHCLSEGLAGLGIPAAPC
PAFQGRRAQTTQDISGVLGEGSEYGDSGIDGVTTEIDGDGELVSRRCKAMSASFSVYSAT
ESSVFNGSDSGSSSAGGGEGRAGEGGRGGVYENFRKELDNQAWTHQGRDCTEEAGSAVSD
EQSSCTLSGAYPSDALIGCAQGTVRKAGALAVKNFLVHKKNKKVEPATRRKWKHYWVSLK
GCTLFLYESDGRSGIDHNSVPKHALWVENSIVQAVPEHPKKDFVFCLSNSVGDAFLFQTS
GQTELENWITAIHSACAAALARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLST
VTDAKKRKTILEQIFLWEQNLEKFYMDLFRCRCYLASLQGGEPPNPKRLLGFASRPTKLA
MGRLGIFSVSSFHALVSARTESSIRKRNQAMPRTFSKRRSRFSSLWGLDTTSKRKTKGHP
SINQVFVDGMEPVRKPLERMFEDSASEKSKEREGSVKNLPQQNVDSDIWVPDYLTPSWVC
LPNNQPVLAIIQPGETALEVLSTICKTHKIDPSNHYLRLKMWIDNQMLFYVPKLEEDISD
LLYKEIEVCPKATKVIRFDKAESCAVGYGFSVAVIDEEGTQQLHITEVKAEGLASAKDLK
AGDEILLLNGKPASALQMEDMRAAFVNQELTLSISTLPELDPRVLCSLPPRRSDGEQDPA
TDIFSQSQEDILDEVSGLTVESPNESLEEGSRLTLQSPGDHQEDKTCMRTGQKNTEQVTA
FCRSLHDMNPLECPMSSSSSSSSSSLSPSPVSALPPTAGIATQRQLSHADKLRKVISELV
ETEKTYVKDLSCLIECYLTPLQKESFLTQDELDVLFGNLGEMVEFQVEFLRTLEDGIRLV
PDLDRLERVEQFKKVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDRDFKAFL
AERNPRQQHSSTLESYLIKPIQRVLKYPLLLKELYSLTDPDSDEHYHLDVAMKAMNKVAS
HINEMQKLHEEYGAVFDQLINDQTADKKEVADLSMGDLLLHSTVMWINPPVCLVKSKKDC
DMAAFVFKTAVVFVYKDSSKHRKKIGGSHRASVNDDKDPFRFRHMIATDSLQVRPLANSE
GTAVCEIVHTRSESEGRPERTFQLCCSSPDSKKDFLKAVHSILREKQRRQRLNTESLPPN
QQYVPFGGKRLCALKGARPAMNKAASAQSRTLSRRKLVRNRFTIDTDLVFHGSNNNSNDS
DTSHPSAYPSLSQHPPPQSNKPQGEDTDRWVEEQFDLRCYEEQGEAIDVGQMKETDILSD
DDEYCKSVRAASAEPADLEGRMEGLDLQGAEVRSQNLNGPVESGSEIMLSFMQEEEVVRI
KHGDDSGLVDSFTSCGVSLSRCATPTIKLAPLKQCAVEGATNKDHDVIWVRRDDFANGCN
SDVF
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgtagaaagtcagaatggggacagtggtttctacggcgatgcgacgggacat
ctctcccgcaagcacacgtcccggtcactccgcatccccagcaagcagccagtcacccgc
cgctcccgccactcttcttcagtgaaacaggaacacagaaactctgatgcttcgactcgg
tcctccagcacccccagcatcccacaatccttggcggagaacggactggaaccttttaac
ggcacagatgcattcggagagtttggcatcaaccctcactggacacagcgcgtcgctatg
acaatgaggccggagtcctatcaacaagacgacgacccgttggccacgccgactcccgag
acctcagaggcggacactgttgctcaagctggaggagaggactccatgggggggggaggg
ggaggagagggagacgtcgttggtgaggaaaggtacctccagcgaatgactgagggtcca
cgggagggagggagttttaaaaagaagaggtccaagtcagcggacatgtggagagaagac
agcctggagttctctctgtccgacctgagccaggagcatctgaccagcactgaggagatg
atagatggaggagaagaagaggaggaggagcagttcacacgccccagaggcaatgcaggc
tcagctgaaagggcatcgtctctggaccatctgtgcagccagcagagtcccggcctcagg
gggcagaggagccgttacgctaaaaatcggagagaaacccagtgtgatgaagggggggag
gggctgatgtctcctaccgaagaggatggtggcgggtatggagcattcacgctcccctgc
cgacgctcccactgcctgtcagagggcttggcaggactcggaatccctgctgcaccatgc
cctgctttccagggacggcgtgcacaaactactcaggacatctcgggtgttttgggcgag
ggaagtgagtatggcgacagtggcattgatggcgtcaccacggagatcgacggggacgga
gagctggtgtcacggcgctgtaaggccatgtcggcctctttctcggtatactccgctact
gagagcagcgttttcaacgggagcgacagcgggagcagcagtgcaggaggaggggaagga
cgagccggcgagggaggcaggggaggagtgtatgagaatttccggaaggagctggacaat
caggcctggacacatcagggccgggactgcacagaggaggctggctccgctgtgagtgac
gagcagagcagctgcacactcagtggtgcgtatccatcggacgctctgattggctgtgca
caaggcacagtcaggaaagcaggagctctggctgttaagaacttcttggttcataagaaa
aacaagaaagtcgaacctgcaacaagacgcaagtggaaacactactgggtctctttgaaa
ggctgtactcttttcctgtatgagtcagacggtcgttccgggatcgaccataacagcgtt
cccaaacatgcattgtgggtggagaacagcattgtccaggccgtacctgaacaccccaag
aaagactttgtcttctgcctcagtaactcagtgggagatgctttcctcttccagacgtcc
ggccagacagaactggagaactggatcacggcgatccactctgcgtgcgccgctgctctg
gctcggcagcaccacagggaggacacagtgcgactgctgcgaaccgagatccgtaaactg
gaacagaagatcgacatggatgagaagatgaagaagatgggagacatgcagctgtccacc
gtcaccgacgccaagaagaggaagaccattctggagcagatcttcttgtgggagcagaac
ttggagaagttttacatggatctgtttcgctgccggtgctacctggccagtctgcaaggc
ggtgaaccccccaaccccaaacgcctgctgggcttcgcatcgcgtcccaccaagctggcc
atgggacgactgggcatcttctctgtctcctccttccatgcactggtgtcagcccgcaca
gaaagcagcatcaggaagcggaaccaggccatgccgcgaactttcagtaaacgtcgtagt
cgtttctcatctctctggggtctggacaccacctcaaagagaaaaaccaagggacatcct
tcaatcaaccaggtcttcgttgatgggatggagccagtgagaaagccattggagcgcatg
tttgaagactctgccagcgagaaatctaaggagagagagggctctgtgaaaaatcttcct
cagcaaaacgtagacagcgacatttgggttcctgattacctgactccctcctgggtgtgt
ctgccgaacaatcagcccgtcttggccatcatacagccgggtgagacggcactggaagtc
ctgagcaccatctgcaagacccataaaatagacccttccaaccactacctgcgtttgaag
atgtggatcgacaaccaaatgctcttttatgttcccaaacttgaagaggatatctccgat
ctgctctacaaagaaattgaggtttgccccaaagctaccaaggtgatccggtttgacaaa
gcagagtcctgcgccgtcggatatggtttttctgttgcagttatagatgaggagggaaca
cagcagctccatattactgaagtgaaagcagagggactagcttctgctaaagatttgaaa
gcaggtgatgagattctgttgctgaatggtaaacctgcatctgccctccaaatggaggat
atgagggcagcgtttgtaaaccaagagctgaccttgagcataagcaccctgcccgagctg
gaccctcgggtgctttgctcccttccaccgcggcgctccgatggagagcaggacccagcc
acggacatcttctcccagagccaagaggacatcctggacgaggtgtcagggttgacagtg
gagagccccaatgagagtttagaggaaggatctcggctgaccctgcagagtcccggagat
catcaagaagacaaaacatgcatgaggaccggacaaaagaacacggagcaggtcactgct
ttctgccgcagtctgcatgacatgaatcccctggagtgccctatgtcatcctcctcttcg
tcgtcgtcgtcatccctctccccgagccctgtgtcagctttaccgcccacagcaggcatc
gccacccagagacagctctcccacgcagacaaactccgcaaggtcatcagtgaactggtg
gagacggagaagacttacgtcaaagacctgagctgcctcatagagtgctacttgacacct
ttgcagaaagagagcttcctaacacaggatgagctggacgttttgttcggtaacctcggg
gagatggtggagttccaggttgagtttctccggacacttgaagatgggatcagactggtg
ccggatctggacagactggaaagggtggagcagtttaaaaaagtgctgttctccttgggg
ggttcgttcctgtattatgccgatcgcttcaagatctacagcgccttctgcgccagccac
accaaggtccccaaggtcctggctaaagcgaaaaccgatcgagatttcaaggctttcctg
gctgagagaaaccccagacagcaacattcatccactctggagtcttacttgatcaaaccc
atccagagagtcctgaagtacccgctgctgctaaaggagctctactctctcactgaccct
gacagtgatgaacactatcacctggacgttgcgatgaaggccatgaataaagttgcgagc
cacatcaatgagatgcaaaaacttcatgaagagtacggagctgttttcgaccagctcatc
aacgaccaaactgcagataaaaaagaggtggctgacctctcaatgggggatcttttgcta
cattctactgtgatgtggatcaaccctccagtctgtttggtcaagagcaaaaaggactgt
gatatggctgcttttgtgtttaaaacagcagttgtatttgtgtacaaagacagctccaag
cacaggaagaaaatcggtggatctcaccgtgcatctgttaatgatgacaaagatcctttc
cgtttccgtcacatgattgcaacggactctctccaagtccgtccccttgcaaactcggag
ggtacagcggtatgtgagatagttcacacaagatctgaatctgaaggaagaccagagagg
accttccagttgtgctgcagttctccagatagtaagaaggacttcctgaaagcagtccat
tctatccttagggaaaagcagcgccggcagcgtcttaatacagagtctttgccacccaac
cagcagtacgtcccattcgggggcaaacgtctgtgtgccctaaaaggagcgcggcccgcc
atgaacaaagcagcatcagctcaatcacgaacgctgtcccgcaggaaactggtgaggaac
cgcttcaccatcgacaccgacctggttttccatggcagcaacaacaacagcaacgattca
gacacttcccacccgtcggcctacccgtctctgtcccagcatcctcctccgcaatccaac
aaacctcagggagaggacacggaccgttgggttgaggagcagtttgacctgcgttgctat
gaagaacagggtgaggccatcgacgtggggcagatgaaggagacagacattttgagcgac
gacgatgagtactgcaagtctgtccgagctgcttcggcagaaccagccgacctggagggg
aggatggagggactcgacctccagggcgcagaggtgaggagccaaaacctgaacggaccg
gtggagtctggaagtgagatcatgctgagcttcatgcaggaggaggaagttgttcgaatt
aagcacggtgatgattcaggcttggtagactccttcacctcttgtggtgtctctctgtct
cgctgtgcaaccccgactataaagcttgcccccttgaagcagtgcgctgtggagggggcc
acaaataaggaccatgatgtcatctgggtgcggcgggacgactttgctaacgggtgcaac
agtgacgtcttctga
DBGET
integrated database retrieval system
