Acidithiobacillus ferrianus: GL267_007185
Help
Entry
GL267_007185 CDS
T10957
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afh Acidithiobacillus ferrianus
Pathway
afh03030
DNA replication
afh03410
Base excision repair
afh03420
Nucleotide excision repair
afh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GL267_007185 (ligA)
03410 Base excision repair
GL267_007185 (ligA)
03420 Nucleotide excision repair
GL267_007185 (ligA)
03430 Mismatch repair
GL267_007185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afh03032
]
GL267_007185 (ligA)
03400 DNA repair and recombination proteins [BR:
afh03400
]
GL267_007185 (ligA)
Enzymes [BR:
afh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GL267_007185 (ligA)
DNA replication proteins [BR:
afh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GL267_007185 (ligA)
DNA repair and recombination proteins [BR:
afh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GL267_007185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GL267_007185 (ligA)
MMR (mismatch excision repair)
DNA ligase
GL267_007185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GL267_007185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XRI70455
LinkDB
All DBs
Position
complement(1441983..1444001)
Genome browser
AA seq
672 aa
AA seq
DB search
MEQVTNADFERMQQLHAELLTANKAYYQKDAPSLSDAEYDALLRELHALEEAHPQWRRAD
SPTRRVGAAPLGMFAEVHYAVPMTSLDNVFDAAGFGDWFARLRKGLGRQEISLSAEPKFD
GLSVNLRYVDGALVQAGTRGDGQNGEEVTANVRTIRNVPLQLLGGDWPDLLEIRGEVVIP
VAAFRRLNEERSRAGESPFANPRNAAAGSLRQLDSQITAKRPLAFFPWGWGESSLPLGTA
HSAIMRRFSAWGFEVTPYLKDMRDLAECERYFSEMQELREGMPFEMDGLVFKVDALAARE
VLGFTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVALLRPVQVGGVTVSRASL
HNQDEVDRKDVRIGDTVLVRRAGDVIPEVVLVILEARPPATQPWRMPLRCPVCDSEVLRL
ANEAAHRCMGGLYCPAQRMGAIEHFASRKALDIRGLGEKLVRQLVEHGLVHSVADLYHLN
EAALCGLERMASRSAQKLLAEIEHSRHTTLPRFLYALGIRQVGESTAKSLAVHFGDLAPL
LAVTVDALQDVPDVGPIVAEAIVHFFAQPHNREVIAALRSAGVQWQPVAPPPGGCFQGMT
LVLTGSLESMTREEAKAAIEGAGGKVSGSVSAKTRYLVVGKDAGSKMEKAKKLGLESLTE
AQFLAMLSEKGS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggagcaggtcacgaatgctgacttcgagcgtatgcagcagttgcatgccgagttactg
accgccaacaaggcgtactaccagaaggacgctcccagcctcagtgatgccgaatatgat
gccctgctgcgggagctacacgctttggaggaggctcacccgcagtggcgaagggcggat
tcaccgacacggcgggtgggcgcggcccctttggggatgtttgcggaagtgcattatgcc
gtgcccatgacctcgctggacaacgtgttcgacgccgccggtttcggcgactggttcgcg
cgtttacggaagggactcggccggcaggagatttctctcagtgccgaaccaaagttcgac
ggcctttcggtcaatctccggtacgtggatggcgcgctggtgcaggccggtacacgtggc
gatggtcagaatggcgaggaggtcacggccaatgtccgcaccattcgcaatgttccgctg
caactgctcggcggtgactggcccgacttgctggagatacgcggtgaagtggtgattccc
gtggcggcctttcggcgtctcaacgaagagcgttcgcgcgcgggagaaagtcccttcgcc
aacccgcgcaacgcggcggcgggaagcctgcggcaactggattcccagataaccgcgaaa
cgacccttggccttctttccctggggatggggggagagcagtctgccattgggtactgcg
catagcgccattatgcgacgcttctccgcctggggcttcgaggtgactccttacttgaag
gacatgcgtgaccttgctgaatgcgaaagatatttcagtgaaatgcaagagttgcgcgaa
ggtatgcccttcgagatggatggcctcgtgttcaaggtcgacgccctggccgcccgggaa
gtcttgggatttacggcccgcgcgccgcgctgggccattgcctacaagtttcccgcccat
gaggaacgtaccgtggtcgaggacattctcgcatcggtagggcgcaccggcgtgattacc
cccgtggccctgttgcgacccgtgcaggtcggaggcgtcaccgtcagccgcgccagctta
cataatcaggatgaggtggatcgcaaggatgtccgcattggcgataccgtgctggtgcgc
cgcgcgggtgatgtgatcccggaagtcgtcctggtcatcctggaagcgcgcccccccgca
acgcaaccctggcggatgccgctgcgttgtccggtatgtgactcggaagtgttgcgcctg
gccaacgaggcggcgcatcgctgcatgggaggtctttattgtccagcccagcgcatgggg
gccatcgagcatttcgcctcgcgcaaggccctggatattcggggcctgggcgagaagttg
gtgcggcagttggtcgagcatggcctggtgcattccgtcgccgatctttatcatctgaat
gaggccgcgctctgtgggctggagcggatggccagccgttccgcgcaaaagctcctcgca
gaaatagagcattcccgccacaccaccttgccgcgcttcctgtacgccttgggtattcgt
caggtgggagaaagcacggccaaatccttggccgtccatttcggggatctggcccccctg
ctggcggtgacggtggacgcgctgcaagatgtcccggatgtcggccccatagtcgccgaa
gccatcgtccactttttcgcccagccgcataatcgggaagtcattgcggcgctacgttcc
gccggtgtacagtggcagccggttgccccccccccaggcggttgctttcagggcatgacc
ctggtgctcacgggttccctggaaagcatgacccgggaagaggccaaggccgccatagaa
ggggcgggcggcaaagtcagcggctccgtttccgctaaaacccgctatctggtcgttggg
aaagacgcgggcagcaagatggaaaaagccaaaaaattgggcctggaatcgctcaccgaa
gcgcagttcctggccatgctttcagagaagggatcatga
DBGET
integrated database retrieval system
