Amphiura filiformis: 140139847
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Entry
140139847 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase A protein-like
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140139847
03012 Translation factors [BR:
afil03012
]
140139847
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
140139847
5.6.2.6 RNA 3'-5' helicase
140139847
Spliceosome [BR:
afil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
140139847
Translation factors [BR:
afil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140139847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
Dicer_dimer
HA2_C
AAA_19
nSTAND3
AAA_22
AAA_14
ResIII
Motif
Other DBs
NCBI-GeneID:
140139847
NCBI-ProteinID:
XP_072017701
LinkDB
All DBs
Position
18:12284635..12335629
Genome browser
AA seq
1279 aa
AA seq
DB search
MGDVKQFFYAWLGKKKLTPSYDVRNSGPKHRQRFLCEVRVPGYSYTGVGNSTSKKDAQAN
AAQDFCSYLVRIGEMNKAEMPAQGMIGAGAMGGEGGDEGDGMGGGFKTEGGGGMGGGGMG
GGGMGGGGGGALPSGVVAPHLALMDIGDRRAGPSGQHGGAIFPGGRRDGDEGGMPSYQRS
YFDFRGEKRKLEESESVDFNSGIHGNWTLANAKSRLHQYLQTNKIPADYKYSPVGQDHNR
SFVAEMSIFVKPLRRSIHAREQGSNKKIASISCSLSLVRQLYHLKMIEAFTGEAKRRKXK
QXLQPYEVSLMGDVEERITNVLQELEITPVPEPMSGNEEGVVSLLIDEGRQTFENPEGPR
GAYGISWSPPLANWNPWLNCNIDEGPLAHLSLQEISLQLQQDMEHQRTNPQYQKMLGDRH
SLPIYQSEGLIIDAITKNPIIVIRGATGCGKTTQVPQYVLDHYIRQGRGAECNIVVTQPR
RISAISIAERVAEERCEELGQSCGYSVRFDTIRPRPTGAVLFLTVGTLLRKLEAGLRGIS
HVVXDEIHERDLNTDFLLVVLRDMLRAFPDMRIILMSATIDTTLFSEYFDNCPVVEVYGR
AYPVQEYYLEDVVQMLGFVPMSQNKKNRNNKNNMEDDDDAIDKEDDEDMNKMVSNDYSEQ
TRRAMAQMSEKEMNFDLIEQLLGYIGNLGVEGAVLVFLPGWNWIFALMRHLQEHPKFGGR
NFLILPLHSQVPREEQHRVFESVPPGVTKIILSTNIAETSITINDVVYVIDICKCKIKLF
TSHNNMTNYATVWASKTNLEQRRGRAGRVRPGFCFHLCSRPRFEKLEQHTTPEIFRTPLH
ELALTIKLLRLGGIADFLGKAIEPPPLDAVIEAVAALKDMHALDEQEELTPMGRVLAKLP
MEPRLGKMIILGCILFVGDAMTIIAAASCFPEPFITMAGKVSGAHKRFGGCRHSDQIAVM
GAFQEWEEQLNGGEDAALGFCDRVQIQMQNMRMIYEARNQLKDILIMEGFPEECLAPQFF
NYNGPDAKMDVIVGLLAMGLSPNVCYHKEKRKLLTTENKSALIHKSSVNFSKFEQTFPSP
FFAFSEKIRTRAVSAKGMTMVTPLHLLLFLARRVENEDGLIKLDDWVQLRMPHMSASKIC
ALRPAIESLIFRMTGDPETIMQPQPRDEALLNVVKTICKPMSGLYSSGEPQKEGGDFGAG
PSGPDNRRFRFSRPPGQGYSDRRGRGGFGGGRGGFGGGGFRGGYGGGGRGGGGFRGGRGG
WIRGPGGRGFHGGRGGGGY
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgggggacgtcaagcagttcttctatgcgtggctgggtaaaaagaagctgacaccatca
tatgatgtgcggaacagtggaccaaaacacagacagagattcctatgtgaggttagagta
ccagggtacagttatactggtgttggtaactccacaagcaagaaagatgcacaggctaac
gctgcgcaagacttctgctcatacttggtgcgcatcggtgagatgaacaaggctgaaatg
ccagcacagggaatgattggagcaggagccatgggaggagaaggaggtgatgaaggagat
ggcatgggaggaggatttaaaaccgaaggaggaggaggaatgggaggaggaggaatggga
ggaggaggaatgggtggagggggaggaggagcgttaccctctggtgttgtagcaccacat
cttgcgttaatggatattggagacagaagagctggaccaagtggacagcatggtggcgct
atatttcctggcggtaggcgagatggagatgaagggggaatgccatcatatcagagaagt
tactttgatttccgtggagagaaacgaaaactggaagagtctgaaagtgtggatttcaat
tccggtatccatggtaactggacgttggccaatgccaagtctcgcttacatcagtatcta
cagaccaacaagataccggctgactacaaatattcaccagttggacaggaccacaacagg
agctttgttgcagagatgtcaatcttcgtcaaaccacttcggcgaagcattcatgctcgt
gagcaagggtccaacaagaagatagcatcgatatcgtgttcgctgtcattggtacgtcag
ctttatcatctgaaaatgattgaggccttcacaggagaagccaaaagaagaaaatagaaa
cagtaattgcagccatatgaagtgtccctcatgggagacgtagaggagagaatcaccaat
gtgttacaagaattagaaataacaccagtaccagaaccaatgagtgggaatgaagaaggg
gtagtctctctgctcattgatgaaggaaggcagacatttgagaatcctgaaggacccaga
ggggcttatgggatatcatggtcacctcctctggctaattggaatccctggttgaattgc
aacatagatgaaggacctcttgcacatttgagtctgcaagaaatcagcttacaattgcaa
caagatatggagcatcaacgtacaaatccacagtatcaaaagatgttgggtgacaggcac
tccctacctatttaccaatcagaaggattaattattgatgcgatcacaaagaaccccatc
attgtgatccgtggagccactgggtgcggtaaaacaacacaagtaccacagtacgtcctg
gaccactacatcagacagggacgaggagcagaatgcaatatcgttgtcacacagcctcgt
cgtatcagtgcaatatccattgctgagcgtgttgctgaggaacgctgtgaagagctggga
caaagctgtggctactcagtacgatttgataccatcagaccacgccctactggagcagtg
ttattccttactgttggtacattattgagaaagttggaggcaggattgagaggtatatct
catgtggtangtgatgaaatccacgaaagagatctcaatactgatttcctgctggtcgta
ctacgagacatgctgcgcgcattcccagatatgcgtattattcttatgtcggcaactatt
gataccacactcttcagcgaatattttgacaattgtccagtagttgaggtgtatggtaga
gcctaccctgtgcaagaatattacttggaagatgtagttcagatgcttggatttgtgccc
atgtcacaaaacaagaaaaacaggaataacaagaacaacatggaagatgacgatgatgcc
atagacaaagaggacgatgaggacatgaataaaatggtgagcaatgactactctgagcag
actcggagagccatggcacagatgagtgaaaaggaaatgaactttgacctcattgagcaa
cttcttggctacattggtaatctgggtgtagaaggagccgtcctggtgtttctgccaggt
tggaattggatatttgctctgatgcgtcatctacaagagcatccaaaatttggagggcgc
aatttcttgatcttgccactccattcccaggttccaagagaagagcagcaccgagtcttt
gagtcggtccctcctggcgtcaccaagattatcctgtccaccaacattgctgagacgagt
atcaccatcaatgatgtcgtctatgtcattgatatctgcaaatgtaagatcaagttgttc
acatcacacaacaacatgaccaactacgccacagtgtgggcatcaaagaccaacttagag
cagagacgaggtcgtgccggtcgagtccgtccaggtttctgcttccatttgtgcagcaga
ccaagatttgagaagttggagcagcacaccacaccagagattttccgtacaccactacat
gaattagccctgaccattaagctcctgagacttggtggtatagcagacttcctgggtaag
gccatagaaccaccgccattggatgctgtcatagaagctgtagctgcgctcaaagatatg
catgcgttggatgagcaggaagagctgactccaatgggtcgtgtgttagccaagcttcct
atggaaccacgactaggaaagatgatcatactgggatgtatactatttgttggtgatgct
atgaccattattgcagctgccagttgtttcccagagccattcatcactatggctggtaaa
gtgagcggggctcataagaggtttggaggatgtcgccatagcgatcagattgctgtgatg
ggagctttccaggagtgggaggaacaactgaatggaggagaggatgctgcccttggtttc
tgtgaccgtgttcaaattcagatgcaaaatatgcgcatgatatatgaagcaaggaaccaa
ctgaaagatatcttaattatggagggattcccagaagaatgtctagctcctcaattcttc
aattacaatggtcctgatgccaagatggacgtcatagtaggtcttttggccatgggactg
tcaccaaatgtctgctaccacaaggagaagcgcaaactactcaccacagagaacaagagc
gccctcattcacaagtcgtcagtcaacttcagcaagtttgagcagacattcccttcacct
ttctttgcttttagtgaaaagattcgtacgagggcagtatcagctaaagggatgactatg
gtcacaccacttcatctgctgttgttcttggcacgtagagtagagaatgaagatggcctc
atcaaattggatgactgggtacagctacgcatgccacacatgtctgcttctaagatatgt
gccctccgtcctgctatcgaatcgttgatattccgcatgacgggtgacccagagaccatc
atgcagccgcaaccgagggatgaagccttgctgaatgtggtcaagacaatttgtaaaccc
atgtcagggttgtactccagtggggaacctcagaaggaaggaggagactttggggccgga
ccatcaggcccggacaatagacggttccgtttctcaagaccacccggacaaggttacagt
gacagaagaggacgaggaggctttggtggcggacgaggtggctttggtggtggtggcttc
agaggtggatatggagggggaggacgcggcggcggtggtttccgtggagggcgtggaggc
tggataagaggaccaggaggaaggggtttccatggtgggcgtggaggaggaggatattaa
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