Amphiura filiformis: 140139927
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Entry
140139927 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like
KO
K14314
nuclear pore complex protein Nup210
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140139927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140139927
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140139927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_2nd
Ig_NUP210_1st
Ig_NUP210_15th
Ig_NUP210_4th
Ig_NUP210_7th
Ig_NUP210_3rd
Ig_NUP210_9th
Ig_NUP210_6th
Big_2
NUP210_Ig
T2SS-T3SS_pil_N
T4SS_pilin
Motif
Other DBs
NCBI-GeneID:
140139927
NCBI-ProteinID:
XP_072017808
LinkDB
All DBs
Position
18:complement(16279002..16352945)
Genome browser
AA seq
1905 aa
AA seq
DB search
MAAHFNRMLQICAILFLYFQLGSCHKLNVPRIMLPYYAATAINFTLEASDGCYRWRSSRP
EVASVQPMDSGVGGCSPHRAQVTALSTHPTQVTSVVFAEEEGSGQIIRCDVIIDNIDLID
IITTTRVLYLGXFPEEFELRALDDEGNTFSSLEGLEFEWTLISDNDGDNVVDAKTILRIV
NFEEMPYTSRQYITSLENQGKQGDKILVEGIRAGSAKVSARIVSPGFKSVKPSIIRLIVI
DHLMLNPSMDIYILVHARVKYRVEKMRQGKITVVPMPSSQYRLVVQQASIATLDEETSMV
TGVALGTTEIKLTDRNIRDDVFSLPSARIHVIEPKYLGFVIFPGKNWVLQTGRYYEIQIE
IFDRDSHKMFPADIPNIRIDTVFQDEYFEVLQSTVNGSHHYVRTRQSGVTEINAALVAVV
RPDGVREELRIPIKESQEAEIYDPIIVKPEFLAFPYQPSKSVIYQYTLKATGGTGTYIWT
SSHREIATVNVHGTMSTANTVGMTNVTAADNRNPSHYGLSMVYVLPPCDMGFLDSQVEAL
VGDVLHLPLAAYAFLPKSKKKLAYTDCREMPLRIEVTDRQIFEIVGGSSDSIEGACMMIH
IKALNAGHTQVTVYYLEGPDRLQASVTVASYVTLKPLDPEDIAVVTPASSKTFILSGGPQ
PWVLDPSQYFETILPEDPSWVEYKNVKALGASKHYHVFRVMCLELGEQAMKVTVGNKPSS
KNRHPSVATATVRFLCTIPVRLQLVPVIRQPNLQMPCPISLDSDNQIPVLNNGQLDIDVR
AVDNSGHYFHNFSSVVIGWTNTDNRLVRFYSPNTIYDDFDGEIPGSKYLRAYQDCTLSQE
IGSLTLTATTRGYDAAVFKKHNIKLADKIHPPVSASLDLSLVTEATIAPKQMSIFNHPSN
RVYLDLQGGSGHFWITPNIQGIAEVIFDEKRKKIEVKPLNDGTVTITAHDLCLETTQHAS
AQIHIAGVNIIDLRVVDKVQVEHDITATVQVLDASRQPLSVSYFPLMGLEPKPASDIITI
RPDPTKGQDDMYTAYYKVHGSILGFTTLSFTAASKTGHMISSKLRDIQVFPPMRLSPRNI
TLLVGCDFQVRSVGGPQPQSQVDYVIRDSTTASITSSGLLTANAVGRTRVTGKAMGLDTE
AGSSVVYSQDTADVNVIQLAGVKIHSSLLRLQTGTEMPVYAMGTNEYETPFTFGHCIPGL
EFYWSVSNPNVFQVEPVFYDGGVSSRAPHNVAMRIRTLHAGEATLRLQVSVGTDSMNQVK
RNALLIDEIQITVFERLELIKPDPCCHSQMLLTPSTQAQIKTTRDGTARMSYQVLSNDRE
QLLRVNSQGLVTTEARTGQASVMVIAHENFGVNQTLVILVKVKPVSYIGIDSRTDIQTTD
DKLAVFPIGATISMSVNFYDNIGDKFHATNAVLHHRLNRFDLLQLQSGPDNGTFVARAAH
AGSTVLKVWDETSPWIEDYVIVPVGSVVEPEEDLTVGDVVCFTSSLLTDEGQRGSWRSSN
PAVIKIDSSSGVGVAVGPGIATLYHDIANKLETETEVTVRPVSRVSLDSDDIRYLTTISQ
DEPYKVTVTLNQSPSIKGNNASAFLSASKVNLPAPPIQCHLRFNNHAIRVQASELFHTYP
AFDPVTGQYYCGITQLQSKHSPHYLSTLAADLALSVTVPRRTGQTEVRSDIVTLTFVPHM
YVQPTMLSLSLSQKSAEITVEGVETTLKALVVTVDDAQSQLLEVGKPYSTSASSLQYPIR
LVEKTVTQMGPVVTNAKAEVYNTLTGEKMVLPVHVNLVPIKEQPQIVQEPKISGWARVIQ
VVLNNYQNWLFLIILILAIAGAVLIGYHVFLAPRYYYTATGPAFLSPGTPMHPSPPPYGP
PSAGYEYQSPYQRGDSGLRNRSARRSPTKLWSTAYSPQEGSTPQY
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacatttcaatcggatgttacaaatttgtgcgattttatttctttattttcag
ttaggatcatgtcacaaactaaatgttccgcgtataatgttaccgtattatgctgctaca
gcaataaatttcacccttgaagccagtgatgggtgctatagatggcgatcgtcacgaccg
gaggtggcatcggtgcagcccatggattctggtgtaggaggatgttccccccatcgtgcc
caggtcactgccttatcaacacacccaacacaggtcaccagtgtggtgtttgctgaagaa
gaaggaagtggtcaaatcatccgttgtgatgtgatcattgacaacatcgatttgattgac
atcataacaacaaccagggtgctatatttagggnnattcccagaggagtttgagctcaga
gctttggatgatgaaggcaacacattcagtagtttagaaggccttgaatttgagtggaca
ctgatatctgataatgatggagacaatgtagtagatgccaagactatactcaggatcgtg
aattttgaagagatgccttacacttctcgacagtatatcacctccttggagaatcaaggc
aagcagggcgataagatcctggtagaaggtattagggctggctctgctaaagtatcggcc
aggattgtatctccaggatttaagagcgtcaaaccaagcattattcgtctgattgtcata
gaccatctaatgttgaatccatcaatggacatctacatattagtacatgcgcgggtgaaa
tatcgggtagaaaagatgagacaaggaaagattacagttgtacccatgccgtctagtcag
tacagactagtggtgcaacaagccagtattgctacattagatgaggagacatccatggtg
acaggagtcgcactaggcaccactgagatcaagttgactgataggaatattcgagacgat
gtgttcagtcttccttcagcacggatacatgtcattgagccgaaataccttggttttgtg
attttccctggcaagaactgggtgcttcagacaggcagatactatgagattcagattgaa
atctttgatagggacagtcacaagatgtttcctgctgatatacctaatatccgtattgat
acagtgtttcaggatgaatactttgaggtgctccagtctacagtgaatggatcccatcat
tatgtgaggacaaggcaaagcggtgtcacagagataaatgctgccctcgttgctgtcgta
agaccagatggtgttcgtgaggagttgagaattccgatcaaagaatcacaagaagcagaa
atctatgatccaattatagtgaagcctgaattccttgctttcccttaccaaccatccaaa
tctgtcatctatcagtacacattgaaggctactggtggcactggaacatatatctggacg
tccagtcatcgtgaaatagcaacagtcaatgtccatgggacaatgtctacagccaataca
gtgggaatgaccaatgtgacggctgctgataatcgcaatccatcccactatggactcagc
atggtgtacgtgttgccaccttgtgacatgggtttcttagactcacaggttgaagcatta
gttggggatgtgcttcatctaccattggctgcctatgcattccttcctaaatctaagaag
aagcttgcctacacagactgtcgtgagatgccattaaggatagaagtaacagacagacaa
atatttgaaatagttggtggatcttctgactcaatagagggcgcttgcatgatgatccac
atcaaggcgttgaatgcaggacacacacaggtcacagtgtattacttagaaggacctgat
aggctgcaagcatcagttactgtagcttcatatgtgacactgaagccgttagacccagag
gacattgccgtggtaacccctgcttcctccaagacattcatcctatcaggaggccctcag
ccatgggtgctggatccatcccaatactttgagaccatcttaccagaagatccaagctgg
gtggaatacaagaacgtcaaagcattaggagcctcaaaacactaccacgtcttccgagtc
atgtgcctggagctgggagaacaagccatgaaggttaccgtcggtaacaagccatcatcg
aagaacaggcatccatcagttgccacagcaacggttagattcttatgtaccataccagta
cgtcttcagctagtgccagtcatccgtcagccaaatctgcagatgccatgcccgatatca
ttggactcggataaccagataccggtgttaaacaatggtcagttggacatagatgtaaga
gcagtagacaacagtggtcactacttccacaacttctcatcagtggtcatcggatggaca
aacacagacaatagacttgtgaggttttatagtcctaatacaatatatgatgactttgat
ggagagataccaggctccaagtatcttagagcataccaagattgcactctgagtcaagag
atcggatcactgactctgactgctacaacaagagggtatgatgcagcagtattcaagaaa
cacaatatcaaattagctgataaaattcacccaccagtgagtgcgtcgttggatttgagt
ctggtgacagaagccactattgctcctaaacagatgtctatctttaaccatccatcaaac
agggtgtatttggatcttcaaggcgggtctggtcacttctggatcacccccaacatacag
ggtatagctgaggtgatatttgatgagaaaagaaagaagatagaggtgaaacctttgaat
gatggcacagtaaccattacagcacacgatctttgcttggagactacccagcatgcatca
gcacagattcacatcgcaggggtcaacataattgacctcagggttgtggacaaggtccaa
gtagagcatgacataacggccacagtacaggtccttgatgccagtagacagccgttatct
gtctcttacttcccactgatgggattggaacccaaacctgcatcagacatcatcactatt
agacctgatccaaccaaaggccaagatgacatgtacacagcgtactacaaagtacacggc
tctatacttggattcacaactctatccttcaccgctgcctctaagactggtcacatgata
tccagtaaacttagagatatacaggttttccccccgatgcgactctcgccacgcaacatc
actctactcgttggctgcgatttccaagtacgcagtgtgggcggaccccagcctcagtcc
caagtagactatgtcatacgtgacagtaccactgccagcatcaccagtagcggattgttg
acggcaaacgcagtgggacgtaccagagtgacagggaaagcaatgggattggatacagag
gcaggctcatcagttgtgtactcacaggacacggctgatgtgaacgtaatacaacttgcc
ggggtcaagattcattcttcattactacgcctgcagacaggaaccgagatgcccgtatat
gccatggggaccaacgaatatgaaactccgttcacttttggtcactgcattccagggcta
gagttctactggtctgtctccaaccctaacgtcttccaagttgaaccggtattttacgat
ggtggtgtgtcaagccgtgccccgcataatgtcgcaatgcgtatacgtactctacacgct
ggtgaggcgactctcagattgcaggtctctgtaggaacggatagcatgaatcaagtcaag
agaaatgcactgctgattgatgaaatacaaatcacggtatttgagaggttagaattgatc
aaaccagatccttgctgtcacagtcagatgctactcacaccaagtactcaggcacagatt
aaaacaacaagggatggaactgctaggatgtcctaccaagtcctcagcaacgaccgagag
caactattaagggtcaactctcagggcttggtgaccactgaagccaggacaggtcaagca
tcggtgatggtcattgcacatgagaactttggtgtgaaccagacgttggtgatactggtc
aaggtaaaaccagtttcatacatcggcattgacagccgtaccgacatccagaccacggac
gacaaacttgccgtattccccattggcgccacaatatctatgtcggtaaacttttatgac
aatattggcgacaagtttcacgctaccaatgctgtgttacatcatcggttgaatagattt
gatctgttacagctgcagtctggccctgataatggcacttttgtagcgagggctgcacat
gctggtagcactgtactgaaggtgtgggatgagaccagtccatggattgaggattatgtc
atcgtccctgtcggtagtgttgtagagccagaggaagacctgacagtaggtgatgttgtc
tgctttacatcatcactgttaaccgatgaaggtcagcgtggatcgtggagatcatctaat
cctgcagtgattaagattgatagctcttctggggttggtgtggctgttggaccagggata
gctactctctatcatgatattgctaacaagctggaaacggagactgaagttactgtgcgt
ccagttagccgtgtttctttggatagtgatgacatcaggtacttgacaactatatcccaa
gatgaaccttacaaagtgacggttaccctcaaccagtcaccaagcatcaaagggaacaat
gcaagtgccttcttgtcagccagcaaagtcaacctaccagcgccccctatccagtgccat
ctgcgatttaataaccacgctatcagggtacaagcatcggagctattccatacatatcca
gcatttgaccccgttacaggccagtactactgcggcatcacacagttacaaagcaagcac
tcaccacactacctcagcacgctagcagccgatctagcactgtctgtcaccgtccctcga
cgcacaggtcagacagaggtcagatcagatatagtgaccttgacctttgtacctcacatg
tatgtacagcctactatgctgtcactaagtttgagtcagaaatctgcagagattacagtg
gaaggagtggagaccactttgaaagccttggtggttaccgtagatgatgcacagtcacag
ctactagaagtaggcaaaccttacagcacaagcgcctcatccctacagtaccctatacgt
ctagtagagaagacggtaacacagatgggtccagtagtgacaaatgccaaggcagaagtt
tataacacactgactggagagaagatggtgttgccggttcatgttaacctggtgccaatc
aaggaacaaccacagattgttcaagaacccaagatcagtggttgggctcgtgtcatccaa
gttgtccttaacaactaccagaattggcttttcctaatcatcctaatcctggcaatagct
ggcgctgttctcatcggctaccacgtctttctcgcaccacgttactattacacagccaca
ggtcctgctttcctgtctccaggaacacccatgcatccttcaccgccaccatatgggcca
ccatcagcaggctatgaataccaaagtccataccaaagaggagattcagggttacggaat
cgcagcgccaggagatcacccactaaattatggagtacagcgtatagtcctcaagaaggc
tctacaccacaatattga
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