Amphiura filiformis: 140155309
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Entry
140155309 CDS
T10871
Name
(RefSeq) TNF receptor-associated factor 6-B-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
afil Amphiura filiformis
Pathway
afil04120
Ubiquitin mediated proteolysis
afil04140
Autophagy - animal
afil04144
Endocytosis
afil04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140155309
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
140155309
04140 Autophagy - animal
140155309
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
140155309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afil04131
]
140155309
04121 Ubiquitin system [BR:
afil04121
]
140155309
Enzymes [BR:
afil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140155309
Membrane trafficking [BR:
afil04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
140155309
Ubiquitin system [BR:
afil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
140155309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
Sina_ZnF
Zn_ribbon_ACC
AKNA
TSC22
Motif
Other DBs
NCBI-GeneID:
140155309
NCBI-ProteinID:
XP_072034196
LinkDB
All DBs
Position
6:33440417..33462019
Genome browser
AA seq
535 aa
AA seq
DB search
MSDMFDVFTRTGADRMRSQILPELHHEVFTRCKSEMSVDNKPLTEQRVFADVCVNREILD
LKAHCPYQDCPEIVELRNMDVHLENCRFGTLICPQKCGLQVRRKSIETHIRNSCPKRRVL
CDHCTVAIPLDESQFHVDNCSKAPSQCNHCSESMLREQLQYHLKTSCPQVVVDCRYKKVG
CMERMERQLMAEHIQKDMQLHMDLLASKFDQLQIPAATPAYSQYNPVTDASLVDYTMDYP
AMGATANASAYPKEMPYTRGTSALDTIALEKYEARASDQSMLDKSHSKYPVGMGNVTSMG
GRSLQRHPSNVSDSGDPRLSVSDSTLDLEVGQLKERVQNLQRNIVQQNQEIIMLKANAER
AQIDAKKATDSLYSLESRLCNGEFYWRLQGYAEMVREAQRGETSVRHSKGFYTGFYGYKL
CLRVNVNVSESSHNSHVSLFVHFLKGEFDDLVDWPFSGKITLTIMDQNADSSKRKHISET
LLSKPDLAAFHRPRTHRNHKGFGYMEFAPVNMLDAGTFIKDDILLIKVLVEMKKL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatgtttgatgtgtttacgagaaccggtgcagacagaatgcggtcacagatt
ctgccggaattgcatcacgaggtctttacgagatgcaagtcggagatgtccgtagacaac
aaaccattaacagagcagagggtttttgcagatgtgtgtgtgaaccgtgaaatattggac
ttaaaagcccattgtccatatcaagactgtcctgaaattgtggagcttagaaatatggat
gtacatcttgagaattgcagatttgggaccttgatatgtcctcagaagtgtggtctccag
gtcagaaggaaatctattgaaactcacattcgtaatagctgtcccaagcgcagagtttta
tgtgatcactgcaccgtagcaatacctctagatgaatcacagtttcatgttgacaactgc
tctaaagccccatctcaatgtaatcactgcagtgaatccatgctgagagaacagcttcaa
tatcatctcaagacaagctgtccacaagttgtagtggattgtagatataagaaagttggc
tgtatggaaaggatggagcgtcagttgatggcagagcatattcagaaagacatgcaatta
cacatggatctcctagccagtaaatttgaccaattacagatccctgcggcaacccctgcc
tacagtcaatacaacccagtcacagatgcttccttagtggactatactatggattaccca
gctatgggagcaacagcaaatgcatctgcatatcccaaggagatgccatacacaagaggc
acatcagccttagataccatagcattggaaaaatacgaagcaagagcgtcagaccaaagt
atgctggataagtcacattccaaataccctgtaggtatgggtaacgttacaagtatgggt
ggtaggtcattgcaaagacatccatccaatgtaagcgactcgggggatccgcgattatcc
gtatcagattcaaccttagacttggaagtcggtcagttgaaagaaagagtgcagaatctt
cagaggaatatcgttcagcaaaatcaggaaattatcatgttgaaagcaaatgctgaacgt
gcgcaaatagatgcgaaaaaagcgacggacagtttgtattctttggaatcacggttatgt
aacggcgagttttactggagactacagggatatgcagagatggttcgtgaagcgcaacga
ggggaaacaagcgttaggcatagtaaaggattttatacaggtttctatggttataaactt
tgtcttagagtcaatgttaatgtatcagagagttcccacaattcccacgtgtcgctcttt
gttcattttctcaaaggggagtttgatgatttagtagattggcctttcagcggtaagatc
acactgactattatggatcagaatgcagatagttcaaaacgcaagcatattagcgagact
ctattatctaagccggatctggcagcatttcataggccaagaactcatcgtaatcacaaa
ggatttggatacatggaatttgctccagtaaatatgttggatgcagggacattcatcaaa
gatgatatccttttgattaaagttttggttgagatgaagaagttataa
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