Amphiura filiformis: 140155309
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Entry
140155309 CDS
T10871
Name
(RefSeq) TNF receptor-associated factor 6-B-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
afil Amphiura filiformis
Pathway
afil04120
Ubiquitin mediated proteolysis
afil04140
Autophagy - animal
afil04144
Endocytosis
afil04517
IgSF CAM signaling
afil04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140155309
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
140155309
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
140155309
04140 Autophagy - animal
140155309
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
140155309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afil04131
]
140155309
04121 Ubiquitin system [BR:
afil04121
]
140155309
Enzymes [BR:
afil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140155309
Membrane trafficking [BR:
afil04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
140155309
Ubiquitin system [BR:
afil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
140155309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
Sina_ZnF
Rab11-FIP3
Zn_ribbon_ACC
AKNA
TSC22
Motif
Other DBs
NCBI-GeneID:
140155309
NCBI-ProteinID:
XP_072034196
LinkDB
All DBs
Position
6:33440417..33462019
Genome browser
AA seq
535 aa
AA seq
DB search
MSDMFDVFTRTGADRMRSQILPELHHEVFTRCKSEMSVDNKPLTEQRVFADVCVNREILD
LKAHCPYQDCPEIVELRNMDVHLENCRFGTLICPQKCGLQVRRKSIETHIRNSCPKRRVL
CDHCTVAIPLDESQFHVDNCSKAPSQCNHCSESMLREQLQYHLKTSCPQVVVDCRYKKVG
CMERMERQLMAEHIQKDMQLHMDLLASKFDQLQIPAATPAYSQYNPVTDASLVDYTMDYP
AMGATANASAYPKEMPYTRGTSALDTIALEKYEARASDQSMLDKSHSKYPVGMGNVTSMG
GRSLQRHPSNVSDSGDPRLSVSDSTLDLEVGQLKERVQNLQRNIVQQNQEIIMLKANAER
AQIDAKKATDSLYSLESRLCNGEFYWRLQGYAEMVREAQRGETSVRHSKGFYTGFYGYKL
CLRVNVNVSESSHNSHVSLFVHFLKGEFDDLVDWPFSGKITLTIMDQNADSSKRKHISET
LLSKPDLAAFHRPRTHRNHKGFGYMEFAPVNMLDAGTFIKDDILLIKVLVEMKKL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatgtttgatgtgtttacgagaaccggtgcagacagaatgcggtcacagatt
ctgccggaattgcatcacgaggtctttacgagatgcaagtcggagatgtccgtagacaac
aaaccattaacagagcagagggtttttgcagatgtgtgtgtgaaccgtgaaatattggac
ttaaaagcccattgtccatatcaagactgtcctgaaattgtggagcttagaaatatggat
gtacatcttgagaattgcagatttgggaccttgatatgtcctcagaagtgtggtctccag
gtcagaaggaaatctattgaaactcacattcgtaatagctgtcccaagcgcagagtttta
tgtgatcactgcaccgtagcaatacctctagatgaatcacagtttcatgttgacaactgc
tctaaagccccatctcaatgtaatcactgcagtgaatccatgctgagagaacagcttcaa
tatcatctcaagacaagctgtccacaagttgtagtggattgtagatataagaaagttggc
tgtatggaaaggatggagcgtcagttgatggcagagcatattcagaaagacatgcaatta
cacatggatctcctagccagtaaatttgaccaattacagatccctgcggcaacccctgcc
tacagtcaatacaacccagtcacagatgcttccttagtggactatactatggattaccca
gctatgggagcaacagcaaatgcatctgcatatcccaaggagatgccatacacaagaggc
acatcagccttagataccatagcattggaaaaatacgaagcaagagcgtcagaccaaagt
atgctggataagtcacattccaaataccctgtaggtatgggtaacgttacaagtatgggt
ggtaggtcattgcaaagacatccatccaatgtaagcgactcgggggatccgcgattatcc
gtatcagattcaaccttagacttggaagtcggtcagttgaaagaaagagtgcagaatctt
cagaggaatatcgttcagcaaaatcaggaaattatcatgttgaaagcaaatgctgaacgt
gcgcaaatagatgcgaaaaaagcgacggacagtttgtattctttggaatcacggttatgt
aacggcgagttttactggagactacagggatatgcagagatggttcgtgaagcgcaacga
ggggaaacaagcgttaggcatagtaaaggattttatacaggtttctatggttataaactt
tgtcttagagtcaatgttaatgtatcagagagttcccacaattcccacgtgtcgctcttt
gttcattttctcaaaggggagtttgatgatttagtagattggcctttcagcggtaagatc
acactgactattatggatcagaatgcagatagttcaaaacgcaagcatattagcgagact
ctattatctaagccggatctggcagcatttcataggccaagaactcatcgtaatcacaaa
ggatttggatacatggaatttgctccagtaaatatgttggatgcagggacattcatcaaa
gatgatatccttttgattaaagttttggttgagatgaagaagttataa
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integrated database retrieval system
