Amphiura filiformis: 140162956
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Entry
140162956 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 7-like
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afil04040
]
140162956
Ion channels [BR:
afil04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
140162956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_5
Ank_3
PKD_channel
Ank_4
YVC1_C
MscL
IFT20
ChrB_N
Motif
Other DBs
NCBI-GeneID:
140162956
NCBI-ProteinID:
XP_072042374
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All DBs
Position
10:complement(47001743..47475547)
Genome browser
AA seq
1017 aa
AA seq
DB search
MPFPRMHLPAASAALRAKRKKREPSNKLPTGLVNMRRRAYDSVLASVGTSEHEVLEEDEL
KFLQATEHGDLPTVRGMLEDDSDSTSRLLRVSDYKDRTAIEIAAENEHLDIVEFLVKNCS
RTLDMHSVNESLMLAISKGYLRITQALLNHPMFLKSKDKFRLGSLTNYFQXENNSKFDHD
LTPIMLAAHVNEIDIIRVLLKRGDIVKKPHHTLCECTPCNNKRRFDPLKHSLAGIHAYRA
LSSPAYISLTSQDPILSAFLLSKDLMELAVIEKEFKNEYRELSKQCKNYASELLHMCQNS
DEVRTILNQEATSLEGCKGSPEDGAEDVFESSVPSESAEEKNRNCSLARLKLAMRYRQKQ
FVAHPHIQHQLATMWYQNFPGWRQSGFFYKLLAVVLIPASLPIMALVYWIAPNSKAGKMV
STPLVKFIVHTASYLIFLLLLFLESALMAVNDNKDERSEFIDNIKNQQNCSEIFPDINDP
KFNLRFSALTPLEYIIVIYLVGMWWQEIKQIYEEGYRRYLASTWNWLDITMLNLYVSCFV
LKIIGYEKAEAAIVYFNSNEDACIQVINDNSIALQHHYYTKGDRVVWLEDDPTLVAEALF
AMANVLSFSRMSYVLPVSEFLGPLQISLGRMLGDIIRFTVVFMVVFMAFFCALYNLYWGY
EKREIDENCPQKQGFGFATFGDTFLTLFWALFGLASPADTNIPEGEKYGRDGHHITETIG
TMLFMVYHVVMALVMLNMLIAMMSNSFQEIESDEDVEWKFARSQLWLSYLEKGATLPIPF
NLVPSPKSFLNVYKWFRKHITRWRRSKDIQGPPRSRSGDINLHMTDRRNGVFNIMNHTEL
RRTGSTHEMNADARSSSSNSRLSRTNMGVRSSKSAESIMKGIVKRYLFKLQREKENEEVN
EGELEEIKNDISSLRFELLEEFKKETNTASTSPKEQGNGELSTVRENEPNEAANNTATKS
SNSEDFLKEVNLKVRSMDTKIDSLSEQIGKFKSDILEVLKGHINGQNGGQNHDVEYI
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttccgaggatgcatcttcctgccgcctctgcggctctaagggctaagcggaaa
aaacgagagccaagtaacaaactacccacagggcttgtcaatatgaggcgaagggcctac
gactcggtgcttgcttcggtaggaacaagtgaacatgaagtactggaagaagacgaacta
aaattcctacaggcaactgaacatggagaccttcccacagttcgtggcatgttggaagat
gacagcgattccacaagtcgtctgctacgagtgtcagactacaaagatcgaactgctatt
gaaatagccgctgaaaatgaacacctggatatagtggaatttttggtgaaaaattgctca
cgaacattggatatgcacagtgtgaacgagtctcttatgttggcaataagcaaaggttac
ttacgaattacacaagcattgctgaaccaccctatgtttttaaagagcaaggataaattt
cgactaggaagtctaacgaactattttcaanccgaaaacaactcgaaattcgatcatgat
ctgactccaatcatgctagcagcccatgtgaacgagatcgatattatacgtgtattacta
aaacgtggtgatattgtgaagaaaccgcatcacacactttgtgaatgtacgccgtgtaat
aacaaacggaggtttgatccgttaaaacattctttagctggaatacatgcttatagggcg
ttgtctagcccagcatacatatcactgacaagccaggatccaatattatctgccttttta
cttagtaaggatctcatggaattagctgttatagaaaaagaatttaagaatgaatataga
gaattgtcgaaacaatgcaaaaattatgcgtcagaacttttacacatgtgtcagaactct
gatgaagttcgcacgatactcaaccaggaggcaacatcacttgaaggatgcaaaggctca
ccagaagacggtgccgaagatgtcttcgaaagcagcgttccatcagaaagcgccgaggaa
aagaacaggaattgttcactcgcgaggcttaagttagctatgagatataggcaaaaacag
tttgtagctcatccacacatacagcatcagttggcgacaatgtggtatcaaaacttcccc
gggtggcgacaaagtggcttcttctacaaactcctggctgtagttcttatacctgctagt
ttaccaattatggcattagtatactggattgctccaaacagcaaggctggtaaaatggtc
agcacaccacttgttaagtttatagtccatacagcttcctacctcatatttctactccta
ctcttcctcgaatcagccttaatggcagtgaacgataataaagatgagagatctgaattt
atcgataatatcaagaatcaacaaaactgcagtgaaatctttccagacatcaatgatcca
aaattcaatctacgattttcagctctgacaccactagagtatatcattgttatttattta
gttgggatgtggtggcaagagattaagcaaatttacgaagaaggctacagacgctatctt
gcttctacgtggaattggctagatattacaatgcttaatctctacgtctcatgctttgta
ctgaaaatcatcggctacgagaaggctgaagcagccattgtgtatttcaatagcaacgaa
gacgcgtgtatacaggtcatcaatgataacagcatagcgctacaacatcactactatacc
aaaggcgatagagtggtttggttggaagacgatccaacactagtggctgaagcactcttt
gctatggcgaatgtcctcagtttttccaggatgtcctacgtccttccagtcagcgaattt
ctcgggcctttacaaatatccttgggccgtatgcttggtgacataatccggttcactgtt
gtgttcatggtcgtgttcatggcgtttttctgtgcattgtataatctctactggggttat
gaaaaacgggaaattgacgagaattgtccacaaaaacagggatttggcttcgctacattt
ggggatactttcctgacattattctgggcgttgtttggcttagcctcgcctgcagacacc
aatataccagagggtgaaaagtacggtcgcgacggccatcatataacggaaaccatcggg
actatgttgtttatggtatatcatgtcgtcatggcgttagtcatgctgaatatgctaatt
gctatgatgagtaactcattccaagaaattgagagcgatgaagacgtagaatggaagttc
gcccgttctcaactttggctctcgtacctcgagaaaggcgccacattacctataccattc
aacctagtaccaagtcccaagtcattcctgaatgtatataaatggtttcgtaaacatata
acaagatggcgaagaagcaaagatatacaaggtccaccaagaagtcgttcaggggatata
aacctacacatgacagataggagaaatggcgtttttaatataatgaatcacacggaactg
cggagaacggggagtacgcacgagatgaatgccgatgcacgaagttcttcctctaattct
cgtttatcccggactaacatgggagtccggtcttctaagagcgccgagagtattatgaag
ggcatcgtaaaacgttatctattcaagcttcaacgagaaaaagaaaacgaagaggtcaat
gaaggagaattagaagaaataaagaacgacatttcgagtctaagattcgagcttctagaa
gaattcaaaaaagaaacaaatactgcttccacgtcgccaaaggaacagggaaatggagaa
ctaagcacggtgcgtgagaacgaacccaatgaagcggcgaataacacagctactaaatcc
agtaatagtgaagacttcctgaaggaggtgaatctaaaagtccgcagtatggacactaaa
atagattcactatccgaacaaataggcaaatttaaatcggatattttagaagtgttaaaa
ggacatatcaatggtcaaaatggaggtcagaaccacgatgtcgaatatatttaa
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