Antarcticibacterium flavum: FHG64_14435
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Entry
FHG64_14435 CDS
T06005
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03030
DNA replication
afla03410
Base excision repair
afla03420
Nucleotide excision repair
afla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHG64_14435 (ligA)
03410 Base excision repair
FHG64_14435 (ligA)
03420 Nucleotide excision repair
FHG64_14435 (ligA)
03430 Mismatch repair
FHG64_14435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afla03032
]
FHG64_14435 (ligA)
03400 DNA repair and recombination proteins [BR:
afla03400
]
FHG64_14435 (ligA)
Enzymes [BR:
afla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FHG64_14435 (ligA)
DNA replication proteins [BR:
afla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHG64_14435 (ligA)
DNA repair and recombination proteins [BR:
afla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FHG64_14435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHG64_14435 (ligA)
MMR (mismatch excision repair)
DNA ligase
FHG64_14435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FHG64_14435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_ligase
Mig-14
HHH
Motif
Other DBs
NCBI-ProteinID:
QCY70503
UniProt:
A0A5B7X793
LinkDB
All DBs
Position
3317868..3319862
Genome browser
AA seq
664 aa
AA seq
DB search
MDIKDKILSLRRELDQHNYNYYVLDKPVISDFDFDLKLKELQKLEDQNPEFFDPNSPTQR
VGGAITKNFQTVFHDHPMYSLSNSYSKEELEDWEKRVKKLVDGKVEFVCELKYDGASISL
TYENGELVRAVTRGDGVQGDDVTNNVKTILSVPLRLKGEFPKRFDIRGEIVLPYEGFAKL
NAERVEAGEEPYANPRNTASGSLKLQDSTEVAKRPLDCLLYNIVGERLDLVSQFDSLEKA
RSWGFKVPKEAKLTASVDEVLNYVNYWEQHRHELPYEIDGVVVKVNDFRQQEELGFTAKS
PRWAIAYKFKAEQEATILKKITYQVGRTGAITPVANLKPVQLAGTVVKRASLHNADQIEK
LDIREGDTLFVEKGGEIIPKIVGVDFGKRDPDSQPTQYITHCPECETLLVRNEGEAQHYC
PNLSGCPPQIIGRIQHYISRKAMDIEGLGGETVALLVKEGLIINYADLYQLQKEQVLPLE
RMAEKSADNLIQGIAKSREIPFERVLFALGIRYVGETVAKKLARHFKSIAALAQATEEEL
VNIDEIGERIAQSVTAFFEVEENRILVQKLKEAGVQMELAAEEFAHHTNILEGNTFVISG
VFHQVSRNELKKLIEDNGGKVSGSISSKTNYLVAGENMGPSKLAKAEQLGTKILSEEEFL
KMLE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagataagattcttagccttcgccgcgaacttgaccaacataactacaac
tattatgtacttgacaagccggtcataagtgattttgattttgatcttaaattaaaggaa
ctgcagaagctggaggaccagaacccggaattctttgatcccaattctcccactcaaagg
gtgggtggtgcgattaccaaaaatttccaaactgttttccacgaccatcctatgtactcc
ctttcaaattcttattcaaaggaggagctggaagactgggagaaacgggtgaaaaaactg
gtagacgggaaggtagagtttgtatgcgaattaaaatatgacggggcttccattagtctt
acttatgaaaacggggaattagtaagggctgtcactcgtggtgatggcgtgcagggggat
gatgttaccaataatgtcaaaaccattctttctgtaccactgcgtttgaaaggggaattt
cccaaacgatttgatattagaggggagatcgtgttgccatatgaaggttttgcaaagctt
aatgcagaacgggtggaggccggggaggaaccttatgccaatcccaggaataccgcatcg
ggaagtttgaaattacaggacagtacagaggtggcaaaacgcccactggattgcctgcta
tacaatattgtaggggagagactggatctcgtgtcccagtttgatagccttgaaaaggcg
agaagctggggctttaaagtaccaaaagaagctaaacttactgcctctgtagatgaggtg
cttaattacgtgaattactgggagcagcatcgtcatgagctgccttatgaaatagatggg
gtggtggttaaggttaatgacttcaggcagcaggaggagcttggatttaccgccaaatcc
cctcgctgggccattgcctataaattcaaggcagagcaggaggccactattctgaaaaag
ataacctaccaggtaggacgaaccggtgccataaccccggttgcaaacctaaaacccgtg
cagctggcaggtaccgtggtgaaaagggcttccctgcataatgccgatcaaattgagaag
ctggatattcgggaaggagataccctttttgtggaaaagggaggagagatcattcctaag
atcgtgggagttgattttggaaaacgtgacccagattctcaacctacacaatacattacg
cactgtcccgagtgtgaaaccctgcttgtgcgtaatgagggagaggcccagcattactgc
ccaaacctaagtggttgcccaccccagataataggtcgtatccagcattatatttcccga
aaggcaatggatattgaaggtcttggaggagaaactgtggctttgctggttaaggaaggt
cttattataaattatgcagatctataccagctacaaaaagaacaggtgctgccattggaa
cgcatggcagagaaatctgcagataatcttatacagggaattgcgaaatcaagggaaatt
ccttttgagcgtgtgctttttgccctaggtataagatatgtgggggagacggtggccaag
aaacttgcacggcatttcaagagtatagctgcccttgcacaggctacagaggaagaactg
gtcaatatagatgaaataggagaacgtatagcccaaagtgtgaccgcattctttgaagta
gaggagaacaggatcctggtccaaaaattgaaagaggccggggtgcaaatggaactggct
gctgaggagtttgcgcatcatacaaacatcctggagggtaacacctttgtgatctcaggg
gtatttcaccaggtttcaagaaatgaattaaagaaactcattgaagataacggcggaaag
gtttcgggttctatatcttccaaaacgaattatctcgtggcaggtgaaaatatgggtccc
agtaaacttgccaaagcagaacagctgggaactaagatcctaagcgaagaggagtttttg
aagatgctggagtag
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