Aphanizomenon flos-aquae: HEQ12_02180
Help
Entry
HEQ12_02180 CDS
T07103
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aflo
Aphanizomenon flos-aquae
Pathway
aflo03030
DNA replication
aflo03410
Base excision repair
aflo03420
Nucleotide excision repair
aflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEQ12_02180 (ligA)
03410 Base excision repair
HEQ12_02180 (ligA)
03420 Nucleotide excision repair
HEQ12_02180 (ligA)
03430 Mismatch repair
HEQ12_02180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aflo03032
]
HEQ12_02180 (ligA)
03400 DNA repair and recombination proteins [BR:
aflo03400
]
HEQ12_02180 (ligA)
Enzymes [BR:
aflo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HEQ12_02180 (ligA)
DNA replication proteins [BR:
aflo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEQ12_02180 (ligA)
DNA repair and recombination proteins [BR:
aflo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HEQ12_02180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEQ12_02180 (ligA)
MMR (mismatch excision repair)
DNA ligase
HEQ12_02180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEQ12_02180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
TP_methylase
Cytidylate_kin2
Flu_PB2_1st
Motif
Other DBs
NCBI-ProteinID:
QSV65888
LinkDB
All DBs
Position
463177..465222
Genome browser
AA seq
681 aa
AA seq
DB search
MMSTQPQVKRIEELRRLLQQASYAYYVLDAPTMEDTVYDRLYRELQELETKNPELITHDS
PTQRIGERPATHFTSIRHNIPLYSLENAFNIEELQNWDQRWRRHSLTQYNSGEIEYVSEL
KIDGAALALTYENGVLTRGATRGDGVTGEDITQNVRTIRSIPLRLNFNDLENIAKVEVRG
EVFLPLQVFKEINEKRQKAGEQVFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGL
DDSSIANTQWQALELLQKMGFRVDTNHKLCHSIAEIAEYYQYWDTERLNSPYMTDGVVVK
LNTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIELLDIRIGDTVIVRKAGEIIPEVVRVIKELRPSDTHPFIMPSHCPV
CGQLVVRETGEAVTRCVNASCPAILKGEIEHWVSRDALDIKGVGEKLVYQLVDKKLIHSV
ADLYELTKEQLCVLERMGEKSAEKLIKAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEK
FTTVEELTAARQSDIAGVYGIGAEIAQSVYQWLRTPANQSLISRLQGIGLQLANSAEAQV
VGEINQKFAGKTFVVTGTLPTLKREEAKALIQKSGGKITESVSKKTDFLVVGADAGSKLD
KAQNLGISQLTEAQLLAMLAE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactcaacctcaagtaaaacgcatagaagaattacggcgcttattacaacaa
gctagttatgcctattatgtactagacgcgccaacaatggaagatacagtttatgatcgg
ctgtatcgggaattgcaagaactagaaacgaaaaatccagaattaattacccatgatagt
ccaactcagcgcattggtgagcgtcccgccacccattttacctcaatccgtcataatatt
cccctgtatagtctggaaaatgcctttaatattgaagaattgcaaaattgggatcaacgt
tggcgacgacactcattgactcagtataatagcggagaaatagaatatgtatctgagtta
aaaattgatggtgctgctttagcattaacttatgaaaatggcgttctaacaaggggtgcg
accagaggagatggagtaacgggtgaggatattacccagaatgtgagaactattcgctca
atccccctccgtttgaattttaacgacttagaaaatattgctaaagtggaagtacgggga
gaagtgtttttacctttacaggtatttaaggaaattaacgagaaaagacaaaaagcaggt
gaacaggtatttgctaacccgcgcaatgccgtagctggtacgctcagacaattagattcc
cgtattgttgcacaacgacagttagattttttcgcctatactttacatattactggctta
gatgattctagtattgccaatacccaatggcaagctttggaactattgcaaaaaatgggt
tttcgagttgataccaatcataaactctgccattctattgctgaaattgccgaatattac
caatattgggatacagaacggctcaactctccctatatgacggatggagttgtagttaaa
ttaaatacttttagactacaggaacaactggggtttacacagaagtttccacggtgggct
atagctttaaaatatcccgccgaagaagccccaacccgtgtagaaaaaattacagtcaat
gtcggcagaaccggcgcattaacacctttagcggaaatgttgcccgtacaattagcggga
acaactgtttcccgtgctactttacataacagcgatcgcatcgaactattagatatccgt
attggtgacacagtaattgtacgcaaagcaggggaaatcattcccgaagtagtccgggta
attaaagaactgcgtcctagcgatacccacccctttatcatgccttcccattgtcccgtc
tgtggacaactagtggttagagaaactggagaagcagttactagatgtgtaaatgcttcc
tgtcccgccattcttaaaggtgaaattgaacactgggtaagtcgtgacgctttggatatt
aaaggagttggagaaaaactagtgtatcaattagtagacaaaaaattaatacattccgtt
gctgatttatacgaattgacaaaagaacaactatgtgtattggaacgcatgggagaaaaa
tcagcggaaaaattgattaaagcgatcgcccaatcaaaaaatcaaccttggtctagagta
ttatatggtttaggcatccgtcacgttggtagcgtcaacgcccaactattaacagagaag
tttaccactgttgaagaattaacagcggccagacaatcagacattgcgggtgtttatggt
attggtgcagaaatcgcccaatcagtctaccaatggttgcggactccagccaatcaaagc
ttaatatcccgtctccagggaatagggttacaattagcaaatagcgccgaagctcaagta
gtgggcgaaattaatcaaaaatttgctggtaaaacctttgtagtaactggcacattacca
actttgaaaagagaagaagcaaaggccttaattcaaaaatccggcggtaaaatcacggaa
tcagttagcaaaaaaacagactttttggttgtaggagcagatgccggttctaaattagac
aaagcccagaatttaggcattagccaattgacagaggcgcagttattggcaatgctggca
gaatag
DBGET
integrated database retrieval system
