Apis florea (little honeybee): 100866148
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Entry
100866148 CDS
T09140
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
aflr
Apis florea (little honeybee)
Pathway
aflr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aflr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100866148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflr03019
]
100866148
Messenger RNA biogenesis [BR:
aflr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100866148
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
TDP-43_C
RBD_AKAP-17A
Motif
Other DBs
NCBI-GeneID:
100866148
NCBI-ProteinID:
XP_003693304
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSSYIQVAEDEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGR
LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKLRCTDLIVLGLPWKTTEQ
NLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVP
NSKEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEV
AQSLCGEDHIIKGVSVHVSNAAPKSEGNNKNFNNQVNSNMRRGAPGPVENNVQGNYQGNR
YMGHSGNNMGPNGWNNPGNRGNLDMPNLQALGITGQNNGGGGGGGMSNPLAMGGLNLSAL
PVNPALVAAALNQASWGLIGNLQNQGNDQGYSNQPGPPGQPPSGNNSIGNSGNSGFLSWM
NQGGGDGNTGNPGTGGPGPNNPNASQGAWQNHPGQRDQKSNTFLKYE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatatatccaagttgccgaagatgaaggcgatgaaccgatcgaattgccaacg
gaagacgatagtacacttttattgactaccgtaaccgcccagtttcccggaacgtgtggc
ctgaaatatcgcaatccagaatctcggacgatgcgcggcattcgtcttgttgacggacgt
cttcatccgcccgaaaatggatggggcaaggcaatttacttttgtgtttttccaaaagag
aacaaacgtaaatctgatgacaatttggaaaattccacagctaagactaaaagaatggaa
acaaagttgcgttgcacagacttgatcgtacttggtttaccatggaaaacaaccgagcag
aacttgcgagagtattttgaaacatttggagaagtactcatggcacaagttaaaaaagat
gcaaagtcaggacaaagcaaaggatttggctttattagatttggaagttatgaatcccaa
ttaagatgtcttgctcaacgacatatgattgatgggcgatggtgtgatgttaaggttccc
aacagtaaggagggaatgattcagcaagtaccctgcaaggtattcgtgggacgctgtaca
gaagacctaactgctgatgatctgcgcgactatttctccaaatatggcgaagtgacggac
gtgttcatcccaaaacctttccgtgcattttcatttgttactttcttagatcccgaggta
gcccagtccctgtgcggcgaggatcacattattaaaggagtgtctgtacacgtatcgaac
gctgcgcctaagtccgaggggaacaataagaatttcaataatcaagtgaactcgaatatg
cgtagaggcgccccaggtcccgtcgagaataacgtgcagggaaactatcagggtaaccga
tacatgggccattcaggtaataatatgggtccaaatgggtggaacaatccagggaatcga
ggcaatttggatatgcctaacctccaagcattgggcattaccgggcagaataatggcggc
ggcggtggtggtggtatgtcgaatccactggcgatgggaggtctgaatttatccgcatta
ccagtcaacccggctctggttgcagctgcattgaaccaagcatcttggggtttgatcggt
aacttgcagaatcagggaaacgatcagggctattcgaaccagcctggcccacctggtcag
ccaccttcaggcaacaatagtatcggtaacagtggaaactctggctttctcagttggatg
aatcaagggggtggtgatggtaatactggcaatcctggaacaggtggtccaggcccgaat
aatccgaatgcatcccaaggtgcttggcagaatcatcctggacagcgtgatcagaaatcg
aacacctttctcaagtacgaataa
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