Alteriqipengyuania flavescens: QQW98_10745
Help
Entry
QQW98_10745 CDS
T09518
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aflv
Alteriqipengyuania flavescens
Pathway
aflv03030
DNA replication
aflv03410
Base excision repair
aflv03420
Nucleotide excision repair
aflv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQW98_10745 (ligA)
03410 Base excision repair
QQW98_10745 (ligA)
03420 Nucleotide excision repair
QQW98_10745 (ligA)
03430 Mismatch repair
QQW98_10745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aflv03032
]
QQW98_10745 (ligA)
03400 DNA repair and recombination proteins [BR:
aflv03400
]
QQW98_10745 (ligA)
Enzymes [BR:
aflv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QQW98_10745 (ligA)
DNA replication proteins [BR:
aflv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QQW98_10745 (ligA)
DNA repair and recombination proteins [BR:
aflv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QQW98_10745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQW98_10745 (ligA)
MMR (mismatch excision repair)
DNA ligase
QQW98_10745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QQW98_10745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WJY18097
LinkDB
All DBs
Position
2078988..2081063
Genome browser
AA seq
691 aa
AA seq
DB search
MSDNHAPTTNEADAANELMRLAKQIARHDRLYHAEDAPEITDQEYDALVRRNAELEAAYP
HLIRADSPSRKVGHGVAASPLGKVTHEVRMMSLDNAFADEEVAEFVARVRRFLSLAEDAP
LAFTAEDKIDGLSCSLRYEEGRLVRAATRGDGQVGEDVTPNVAHIADIPQELAGSVPRVF
EIRGEVYMAKADFLALNAAHEEAGEKLFANPRNAAAGSLRQKDAGVTAKRPLRFWAHGWG
AVEGELPGDTQTAVVEAIATMGVPVSPLFTTCETLEQMLAHYEKIGAQRADLPYEIDGVV
YKVDRLDYQQRLGFVAKAPRWAIARKFPAEQAETTLESIDIQVGRTGKLTPVGRLAPVLV
GGVTVTNVTLHNRDEIQRLGVRPGDRVVIQRAGDVIPQVVRNLTPDAKREPFVFPDHCPE
CGSEAVSEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQFFALGWLES
PADIFRLKDRRQDILALEGWQDKSVDKLLASIEARREPDAARLLFGLGIRHIGAVTARDL
MKHFHALPALRDAAQQARAGDGEAAASLTAIDGIGSAVVEALGDFFHEDHNVAVWEDLLS
EVSPPRYEVETRDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKASGSVSAKTDLLVAG
PGAGSKLKKAAELGIETIDEAGWAAIVAAAG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaaccatgccccgacgacgaatgaggccgatgccgccaacgagttgatgcgc
cttgccaagcagattgcgaggcatgaccggctgtatcatgccgaggacgcgccggagatt
accgatcaggaatacgatgcgctggtgcggcgcaatgcggagctggaggcggcctatccg
catctgatccgcgcggattcaccgagccgcaaggtggggcatggtgtcgccgcctcgccg
ctgggcaaagtgacacacgaggttcgcatgatgagcctcgacaatgcctttgccgacgag
gaggtggcggagttcgtcgcgcgggtgcggcgcttcctctcgctggccgaggatgcgccg
ctcgccttcacggcggaggacaagatcgacggcctttcctgctcgctgcgttacgaggag
gggcggctggtgcgcgccgcgacgcggggcgacgggcaggtgggcgaggatgtgacgccc
aatgtggcgcatattgctgatatcccgcaggaacttgccggctcggtgccgcgcgtgttc
gaaatccgcggggaggtctacatggccaaggccgatttcctcgcgctcaatgcggcgcac
gaggaggcgggggagaagctgttcgccaatccccgcaatgccgccgcaggatcgctgcgg
cagaaggatgcgggcgtcacggcgaagcggcccttgcggttttgggcgcatggctggggc
gcggtcgagggcgaactgccgggtgatacgcagaccgctgtggtggaggcgattgcgacg
atgggcgtgccggtctcgcccctgttcaccacctgcgaaacgctggagcagatgctcgcc
cattacgagaagatcggcgcgcaacgtgctgacttgccgtatgaaatcgacggtgtcgtc
tacaaggtcgaccggctggattaccagcagcggctgggcttcgtcgccaaggccccgcgc
tgggcgatcgcgcgcaagttcccggcggagcaggcggaaacgacgctggaaagcatcgac
atccaggtcggccgcaccggcaagctgacgcccgtcggcaggctggccccggtgctggtg
ggcggcgtgacggtgaccaatgtcacgcttcataatcgcgatgaaattcagcggcttggc
gttcgccccggagaccgcgtggtaatccagcgcgcgggcgacgtgatcccgcaggtcgtg
cggaacctgacgccggacgcgaagcgcgagcctttcgtgttccccgaccactgccccgaa
tgcggcagcgaggcggtgagcgaggagggcgaggtcgacgtgcgctgcacaggcggtctc
atctgtcccgcgcaacgcacggaaagactgaagcatttcgtcagccgcggcgcgctcgat
atcgacggtctgggcgagaagaccatcgaccagttctttgcgctaggctggctggaaagc
cccgccgacatctttcgcctgaaggaccggcggcaggatatcctcgcgctcgaaggatgg
caggacaagtctgtggacaagctgttggccagcatcgaggcgcgacgcgagcccgacgcg
gcgcggctgctcttcggcctcggcatccggcatatcggcgcggtgacggcgcgcgacctg
atgaagcatttccacgcgcttccggccttgcgcgacgcagcgcagcaagcccgcgcaggc
gacggggaagccgccgcctcgctcaccgccatagacggaatcggttcggccgtggtggaa
gcgctcggcgatttcttccacgaggatcacaatgtcgccgtgtgggaagacctgctgtcc
gaagtcagcccgccgcgctacgaggtcgagacgcgtgacagcccggtggcgggcaagacc
gtggtcttcaccggcaagctggagacgatgagccgcgacgaggcgaaggcgcaggccgag
cggctgggcgccaaggccagcggatcggtcagcgcgaagaccgacctgctggttgccggg
ccgggcgcgggcagcaagctcaagaaagccgccgagctcggcatcgagaccatcgacgag
gccggctgggccgccatcgtcgcggctgcgggctag
DBGET
integrated database retrieval system
