Acidaminococcus fermentans: Acfer_0011
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Entry
Acfer_0011 CDS
T01151
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
afn
Acidaminococcus fermentans
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afn03032
]
Acfer_0011
03400 DNA repair and recombination proteins [BR:
afn03400
]
Acfer_0011
Enzymes [BR:
afn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Acfer_0011
DNA replication proteins [BR:
afn03032
]
Prokaryotic type
DNA Topoisomerases
Acfer_0011
DNA repair and recombination proteins [BR:
afn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Acfer_0011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DUF4715
Motif
Other DBs
NCBI-ProteinID:
ADB46421
UniProt:
D2RMU1
LinkDB
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Position
11055..13550
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AA seq
831 aa
AA seq
DB search
MDDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM
NEAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSV
DGDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSA
GIAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQA
YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR
DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEY
YLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEK
FGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIMGIAREDLL
DVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVITISHQSYIKRQALTNFRNQNRGGRGI
KAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFI
RNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSARKGGLIAINL
GEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPMGRTSHGVRGISLRPHDSVVSMD
SCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIVGSKFINETHDI
MLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVAALAIVNTVSEDE
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
gtggatgatcagcagaatgacaagcagaccatctctgccggcaaggtaatccccgtctat
gtggaagatgagatgcagaaatgctacatcgactacgccatgagcgtcatcgtccagcgg
gccctgccggatgtgcgggacggtctgaagccggtccaccgccgcatcctctatgccatg
aacgaggcagggatgctgcccaacaaggcctataaaaaaagcgcccgtatcgtgggcgat
gttttggggaaataccatccccacggggattcttcggtctatgacgccattgtgcgtctg
gcccaggatttctccacccggtatctgatggtggacggccacgggaacttcggttccgtg
gacggagacccggccgctgccatgcggtacacggaagtccggatggggaaaatcgccgtg
gagatgctccgggacattgaaaaagatacagtggatttcatccccaactacgatgaatcc
ctgaaggaacccaccgtgctgccggccaaggtgccggccctcctgatcaacggatccgcc
gggatcgccgtagggatggccaccaacattccgccccacaatctgggagaagtggtggat
gcctgcgtgatgctcatcgaccatccggatgccacggtggaacagctgatgacggccgta
aaggggccggatttccccaccggggccaagatcctgggcctttccgggatccgccaggcc
tataccacaggacggggcgtggtgaaggtacgggccaagacccatgtggaacccatgccc
aagaacaagaaccggatcgtggtgacggaaatcccctaccaggtgaacaaggccaagctc
attgagaacatcgcccatctggtccaggacaagaccctggaaggaatcaccgacctgcgg
gatgaatcggaccggaagggcatgcgcatcgtcatcgaactgcgcagcgatgtggttcct
gagatcatgctgaacaagctgtacaaacacacccagctccaggattccttcgggatcatc
atgctggccctggtgaacggccatccccggatcctgaacctgaaacagatcctggaatat
tatctggaccaccagaaggacgtcatcacccggaaatgccggtatgaactgaaaaaagcc
aaagaacgggcccatatcctggagggcttgaaaatcgccctggatcacctggacgaagtg
atcgccaccatccgggccagcgccaacggggaagtggccaaggccgccctgatggaaaaa
ttcgggctcagcgaccggcaggcccaggccatcctggatatgcgtctccagcggctgacc
ggcctggaacggcagaaaatcgaggacgaatacaaagaagtcatggccactatcgcctat
ctggaagatgtgctcagcgatgaacacaagatcatgggcattgcccgggaagacctgctg
gatgtgaagaaacggttcggggatgcccgccggacttccatcgtgccggataccggggac
ctggaaaccgaagacctgattgcggaagaagacgtggtgatcaccatcagccaccagagc
tacatcaagcgccaggcactcaccaacttccggaaccagaaccggggcggccggggcatc
aaggccggcagcggcaagatcgtgaaggaagacaacaaggtaaagggagacttctcggaa
catctgctcatggccagcacccatgacaacatcctgttcttcaccaaccggggacgggtg
taccggcagaagggattcgagatcccggaagccagccgcaccgccaagggcactttcatc
cggaatctgctgcctctggaagagaacgaaaaagtcaacgcggtgatcgccgtaaagagc
ggcatcagtgaggacgagaagaagttcctgttcatggccaccaacctgggctatgtgaag
cggaccagtgtcagcgaattcaaatccgcccggaaaggcggactcatcgccatcaacctg
ggcgaaggggaagaactgattgatgtgaagctgaccagcggacacaatgatatcctgctg
gccacccgggacggctacgccatccacttcctggaagacgatgtgcggcccatgggccgg
accagtcatggggtgcggggcatcagcctgcggcctcacgacagcgtggtttccatggac
agctgtgtggatgatacgggagaagtgctgacggtaaccgacaaagggcagggaaaacgg
acggacatctccgaataccgggtccagacccggggcggcaaaggcatcatcaacctgaag
gtgaccgaccggaccggcctgatcgtgggttccaaattcatcaacgagacccatgacatc
atgctgatctctgcagcggggatcatcatccggatgaacgctgccgatatttccacctac
ggacggaatgcacagggcgtcaagctcatggatctggaagcaggggacaaagtggccgca
ctggccatcgtgaatacggtcagcgaggacgagtaa
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